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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS06475 [old locus tag: SAUSA300_1199 ]
- pan locus tag?: SAUPAN003624000
- symbol: SAUSA300_RS06475
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS06475 [old locus tag: SAUSA300_1199 ]
- symbol: SAUSA300_RS06475
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1320910..1322148
- length: 1239
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1320910..1322148) NCBI
- BioCyc: SAUSA300_RS06475 BioCyc
- MicrobesOnline: see SAUSA300_1199
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1201ATGAAAGATATAAGTAAGATAGTAGCTGACGTCGAATCAACGTTAGCACCATATTTTAAA
GAAATTGAAGAAACAGCATATATTAATCAAGAAAAAGTATTAAATGCATTTCATCATGTC
AAAGCAACCGAAAGTGATCTACAAGGATCAACAGGATACGGGTATGATGACTTTGGACGT
GATCATTTAGAAGAAATATATGCGCAGGCATTTAAAGCAGAAGATGCAATTGTTCGTCCG
CAAATTATTTCAGGTACGCATGCGATTACTATTGCATTACAAAGTTTATTAAAACATGGT
GATGAATTAATTTATATAACGGGTAGTCCATATGACACTTTACTTGAAGTCATTGGCGTA
AACGGAAATGGTATTGAAAGTTTAATGGAGCATGGCGTATCGTATAAAGATATTGCACTT
AAAGAAGGTAAGATCGATATTGAAAGTGTGTTAGATGGGGTTTCTGAGCGCACCAAAGTA
ATAGCGATTCAACGTTCGAAAGGCTATGATCAAAGACCTTCAATTCCGCTAGATGAAATT
GAAAAGGTAATTACTAGGTTGAAAAACGTGCATCCTAATATTTTAATATTTGTGGATAAC
TGTTATGGGGAATTTGTTGAAAGACGTGAACCTATAGAATGTGGTGCCGATTTAATAGCA
GGATCATTAATTAAAAACCCTGGCGGTGGTTTAGCTAAGATTGGTGGATACATTGCTGGT
AGAAAAGATTTAATTGAACGATGTGGTTATAGATTGACAGCACCTGGTATTGGTAAAGAA
GCGGGTGCATCATTAAATGCATTGCTTGAAATGTATCAAGGTTTCTTTTTAGCACCACAC
GTTGTCAGTCAGAGTCTTAAAGGTGCATTGTTTACTAGTTTATTTTTAGAAAAAATGAAT
ATGAACACAACGCCGAAGTACTACGAAAAACGAACTGATTTAATTCAAACAGTTAAATTT
GAAACGAAAGAACAAATGATTTCATTTTGTCAAAGTATTCAACACGCATCCCCAATTAAT
GCACATTTTAGTCCAGAACCTAGTTATATGCCTGGTTACGAAGATGATGTTATTATGGCA
GCTGGTACGTTTATTCAAGGTTCATCGATTGAATTATCTGCAGATGGACCTATTCGTCCT
CCTTATGAAGCATATGTTCAAGGAGGATTAACATATGAACACGTTAAAATTGCTGTGACA
AGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS06475 [old locus tag: SAUSA300_1199 ]
- symbol: SAUSA300_RS06475
- description: hypothetical protein
- length: 412
- theoretical pI: 5.01316
- theoretical MW: 45487.5
- GRAVY: -0.179854
⊟Function[edit | edit source]
- TIGRFAM: Energy metabolism Amino acids and amines methionine gamma-lyase (TIGR01328; EC 4.4.1.11; HMM-score: 29.8)and 4 moreAmino acid biosynthesis Aspartate family O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase (TIGR01326; HMM-score: 22.8)Amino acid biosynthesis Serine family O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase (TIGR01326; HMM-score: 22.8)Amino acid biosynthesis Aspartate family O-succinylhomoserine sulfhydrylase (TIGR01325; EC 4.2.99.-; HMM-score: 18)Amino acid biosynthesis Aspartate family cystathionine beta-lyase (TIGR01324; EC 4.4.1.8; HMM-score: 12.9)
- TheSEED: see SAUSA300_1199
- PFAM: PLP_aminotran (CL0061) Met_gamma_lyase; Methionine gamma-lyase (PF06838; HMM-score: 653.8)and 3 moreCys_Met_Meta_PP; Cys/Met metabolism PLP-dependent enzyme (PF01053; HMM-score: 25)Aminotran_1_2; Aminotransferase class I and II (PF00155; HMM-score: 23.4)Aminotran_5; Aminotransferase class-V (PF00266; HMM-score: 12.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.007992
- TAT(Tat/SPI): 0.000317
- LIPO(Sec/SPII): 0.000522
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 446574701 NCBI
- RefSeq: WP_000652047 NCBI
- UniProt: see SAUSA300_1199
⊟Protein sequence[edit | edit source]
- MKDISKIVADVESTLAPYFKEIEETAYINQEKVLNAFHHVKATESDLQGSTGYGYDDFGRDHLEEIYAQAFKAEDAIVRPQIISGTHAITIALQSLLKHGDELIYITGSPYDTLLEVIGVNGNGIESLMEHGVSYKDIALKEGKIDIESVLDGVSERTKVIAIQRSKGYDQRPSIPLDEIEKVITRLKNVHPNILIFVDNCYGEFVERREPIECGADLIAGSLIKNPGGGLAKIGGYIAGRKDLIERCGYRLTAPGIGKEAGASLNALLEMYQGFFLAPHVVSQSLKGALFTSLFLEKMNMNTTPKYYEKRTDLIQTVKFETKEQMISFCQSIQHASPINAHFSPEPSYMPGYEDDVIMAAGTFIQGSSIELSADGPIRPPYEAYVQGGLTYEHVKIAVTRAVNQLKEQGLI
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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