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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS07675 [old locus tag: SAUSA300_1407 ]
- pan locus tag?:
- symbol: SAUSA300_RS07675
- pan gene symbol?: —
- synonym:
- product: transcriptional regulator
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS07675 [old locus tag: SAUSA300_1407 ]
- symbol: SAUSA300_RS07675
- product: transcriptional regulator
- replicon: chromosome
- strand: -
- coordinates: 1572658..1573095
- length: 438
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1572658..1573095) NCBI
- BioCyc: SAUSA300_RS07675 BioCyc
- MicrobesOnline: see SAUSA300_1407
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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421ATGGGGAACACAATATATGATATCAAGCCAGGCACATTTAAATATATTGAATCAGAAATA
TATAATTTAAATGAGAACAAGAAAGAAATAAAAAGATTGAGGTTGGAAATACTTAATCCA
ACGAAGGAACAAGATTCCAATATTGTATATGGACCATTACAAAAAGGCGAACCAGTTAGA
ACAACTGAACTAATGGCAACTAGATTATTAACTAATAAGATGTTACGAAACCTTGAAGAA
ATGGTCGAAGCAGTTGAGAGTGAATACTTAAAGTTGCCTGAAGATCATAAGAAAGTAATA
AGGCTCAAGTATTGGAATAAAGAAAAGAAGTTAAAGATGGAACAGATAGGACATGAATGC
CATATGCATCGTAATACTGTTACTACTATACGAAAGAACTTTGTTAAAGCGGTAGCGTAT
CATGCAGGTATCAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS07675 [old locus tag: SAUSA300_1407 ]
- symbol: SAUSA300_RS07675
- description: transcriptional regulator
- length: 145
- theoretical pI: 9.92753
- theoretical MW: 17158.9
- GRAVY: -0.75931
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage transcriptional regulator, RinA family (TIGR01636; HMM-score: 61.2)Regulatory functions DNA interactions phage transcriptional regulator, RinA family (TIGR01636; HMM-score: 61.2)and 2 moreRNA polymerase sigma factor, sigma-70 family (TIGR02937; HMM-score: 20.4)RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1 (TIGR02984; HMM-score: 13.1)
- TheSEED: see SAUSA300_1407
- PFAM: HTH (CL0123) HTH_23; Homeodomain-like domain (PF13384; HMM-score: 17.2)Sigma70_r4; Sigma-70, region 4 (PF04545; HMM-score: 16.4)Rep (CL0169) Relaxase; Relaxase/Mobilisation nuclease domain (PF03432; HMM-score: 15.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00478
- TAT(Tat/SPI): 0.000228
- LIPO(Sec/SPII): 0.000518
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 446450657 NCBI
- RefSeq: WP_000528512 NCBI
- UniProt: see SAUSA300_1407
⊟Protein sequence[edit | edit source]
- MGNTIYDIKPGTFKYIESEIYNLNENKKEIKRLRLEILNPTKEQDSNIVYGPLQKGEPVRTTELMATRLLTNKMLRNLEEMVEAVESEYLKLPEDHKKVIRLKYWNKEKKLKMEQIGHECHMHRNTVTTIRKNFVKAVAYHAGIK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.