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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS07980 [old locus tag: SAUSA300_1461 ]
  • pan locus tag?: SAUPAN004065000
  • symbol: SAUSA300_RS07980
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS07980 [old locus tag: SAUSA300_1461 ]
  • symbol: SAUSA300_RS07980
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1615989..1616168
  • length: 180
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    TTGCTAGTTATATCGTCTCAAGTTAAAAGTTTTATATCTTATGTCGTAATTATTAATACA
    AAGGTTATTCATTTGGAGGCACACAAAATGCAAAATAAAGTTTTAAGAATTATCATTATC
    GTTATGCTTGTATCAGTTGTATTAGCATTGTTATTAACGAGTATCATTCCAATTTTATAA
    60
    120
    180

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS07980 [old locus tag: SAUSA300_1461 ]
  • symbol: SAUSA300_RS07980
  • description: hypothetical protein
  • length: 59
  • theoretical pI: 10.8574
  • theoretical MW: 6610.28
  • GRAVY: 1.51186

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SAUSA300_1461
  • PFAM:
    no clan defined DUF1240; Protein of unknown function (DUF1240) (PF06836; HMM-score: 14)
    Ribosomal_L13; Ribosomal protein L13 (PF00572; HMM-score: 13.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.013229
    • TAT(Tat/SPI): 0.00012
    • LIPO(Sec/SPII): 0.003895
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLVISSQVKSFISYVVIINTKVIHLEAHKMQNKVLRIIIIVMLVSVVLALLLTSIIPIL

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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