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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS08095 [old locus tag: SAUSA300_1483 ]
- pan locus tag?: SAUPAN004096000
- symbol: SAUSA300_RS08095
- pan gene symbol?: —
- synonym:
- product: ATPase AAA
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS08095 [old locus tag: SAUSA300_1483 ]
- symbol: SAUSA300_RS08095
- product: ATPase AAA
- replicon: chromosome
- strand: -
- coordinates: 1637380..1639875
- length: 2496
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1637380..1639875) NCBI
- BioCyc: SAUSA300_RS08095 BioCyc
- MicrobesOnline: see SAUSA300_1483
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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2461ATGAATTTAAAAGCACCGTATGCAGGTTTAAGAGATAATTTGTTATTAACGAAAACTGGC
GAAGTTTGGGCGTATTATCGTGTTCGTTCTGAGTCTATATCAACAGCAAATTATGATGCA
AAAGAAGAATCAAAAAAGCGTATGCGTTATTTTTTAGAGTCGATTAAAGGTTATCAAGAT
TTTCATTTTGAAATGTATGACCACGATTTAGATTTGCGAAATAAATTTAAAGAAATTAGT
AAAGATTTTGATGATGAAGCTTTTAATGTAGCTGAATATTATTCAAAAGAAACTATTGAC
GTATTAGAACAAGAATTACAAATGATTACGCATAATTCTTTTGTTATGGGTGTTAAAATA
CGTGAATTAGCTGACGATGCAGTTACACTTAAAGAGATTTTAAAAAGTACATTATCAGAT
ACGGCTGAGCGTATTGTTTCGAATTTTGGTTTTGATGTGAATTTAGACGATAAAATTTTA
GATAAGTATAAAACATTTGAACGAGATTTGGCTGATAGTTTTCTAGGTATTGGAGGCGAG
CGTTTAACTGAGAATGAATTGGCTTATATTATTAGAAAGCCTTTTATTTCAAATGCAACA
CATGACGTACAGGAAGAATCTTCAAGAAGAGCTATTACAGATATTTATAATGCAGTAATT
GACCCTACTCGCTTGAGTGTTTTAGAAGTTGAAAATGATAACGAGAAATTTTATACAACA
ACAGTTGTTGTTGATGATTTTCCGTTAGATATGGAATATACACATTTATTTGAGAAAGCT
CAAAATATGCCTTTTCCGGTTGAATGCCATGTAAAAGCAAAAATCATTAATAATGAGAAA
GTTAAGAAAAAATTTGACCGTGCGAAAATAAATCATAAACAACAAGCAAAAGAAAAGCAA
GATACTGGCGACAGTGCTTCGGAAGATGTTCAAGATAATTTGTTTGTATTGAATCAAATG
GAACGAGAAGTGACTGGCTCAGGTGTATTTATTGAGTGGGTATTTATGTTTGTAATTAAA
AGTGATGATTATAGAGATTGTAAACGTAAAGCAAAGCGTTTGATGAAACGATTAAAGGAA
ACTCAAATATATGCAGTTAATCCATTAGCTGACCAGTTACAATTGTTTTATCAATGTTTA
CATGGTAATGATTTATTTATTAATAAGTATTGGTTACAAAGAACAACGGCAACAGGTATA
GCAGAGAATTTATTTGGTGTGTCTCAAAGTTTGGGAACAAAAACGGGTTTTTATATAGGG
CGTATTGATAAATTTATACGTTCTGTTTCACGTGAGGAAGCTGTTGCAAGTTCAAGGGAT
ATAATTTTGTTTAGTTTATTGTTGGCCGCAAAAGGTATTAAGGGGGCTGTCAGTGATAGT
CCGCATGTTTTAATTACTGGTCAAACTGGGAAAGGTAAATCATTTTTAGCAAAATTATTA
TGGATTTATACATCATTTTTTAAAGGTCAAATGTTGTACTGGGATCCAAAATCTGAGTTT
GCAGAATGGTTTGACAGAGTAACAGAAAGTAAGGAAATGCAAGAAAAGTATCCCCTATTT
ATTAATCATTTAAAAACATTTAAATATGTAACATTGAATTATGAAGATTCAACCAATTAT
GGTTGTCTAGACCCTATTGTATTTTTAGATGGTATTGAAGCTAATGAGATGTTGAAATCA
GTGTTTGATGAAATTAAATCTTTTGAAAATTATCATCATATTGAAACAGCAATTTATCAA
GCTATTTCTGATACGGTTGAAGAACGTGAAAATGGTAAAAAAGTTGGTTCATTAAATGTA
ATTGAAAAATTACAGAATAATGAAGATGAGCATGTAAAAAATGCAGGCGATTTATTATTT
GAAAAAACGCAAAACAATATTTTAAAACTTGTTTTTAGTGATGGTACGAATCCAGCTTTA
AATATTCAAGAAAAAGCAACTATTTTACAGGTTAAAGGTTTAGATATGCCTAAAGCAGAT
GATGATACATCAAGTTATTCAACAAGTGAGAAAAATGGGATTACATTAATGTTATTAATT
GGTAAGTTTTTAGAGAAATTCGGTTCTCGTAGAGATGTTCAAACGACTATATTTATTGAT
GAGGGTTGGGCTTTTAGTGCTTCAAGACAAGGTAAAAAAGTTGGTAAGCGTATAAAAAGA
ACGGGACGTTCTGAGAATAATTCACTTGTATTTATTACACAATCGGTAAAAGATAAAGCA
GATGATGATGGTGGTAACTTTGGTTGTCATTTTGCATTTGATGAAAAAGATGAACGTGAG
GATATTTTAAAATCTTTAGGCTTAGAATATTCAAAAGAATCTCCTGAAAACATGGAGATG
TTGAAAGATTTGAAGAAAGGTCAATGTATATTCAGTGATTTTTATGGACGTGTTGGAAAA
ATGGTTGTACATTGTCCATTTGAGGAAATGACTGAAGCATTTAGAACACAAGAAGATTCT
GCAAGCTCTAAAGCTGAAGAAAAATTTGCGATGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS08095 [old locus tag: SAUSA300_1483 ]
- symbol: SAUSA300_RS08095
- description: ATPase AAA
- length: 831
- theoretical pI: 5.14155
- theoretical MW: 95592.5
- GRAVY: -0.513598
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_1483
- PFAM: P-loop_NTPase (CL0023) AAA_10; AAA-like domain (PF12846; HMM-score: 314.4)and 6 moreDUF87; Domain of unknown function DUF87 (PF01935; HMM-score: 26.7)Rep (CL0169) Relaxase; Relaxase/Mobilisation nuclease domain (PF03432; HMM-score: 16.2)P-loop_NTPase (CL0023) Sigma54_activat; Sigma-54 interaction domain (PF00158; HMM-score: 15)no clan defined SLAM; Signaling lymphocytic activation molecule (SLAM) protein (PF06214; HMM-score: 14.1)WGR; WGR domain (PF05406; HMM-score: 13.7)P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 12.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 1.78
- Cytoplasmic Membrane Score: 8.16
- Cellwall Score: 0.06
- Extracellular Score: 0.01
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00891
- TAT(Tat/SPI): 0.001361
- LIPO(Sec/SPII): 0.00173
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 446972008 NCBI
- RefSeq: WP_001049264 NCBI
- UniProt: see SAUSA300_1483
⊟Protein sequence[edit | edit source]
- MNLKAPYAGLRDNLLLTKTGEVWAYYRVRSESISTANYDAKEESKKRMRYFLESIKGYQDFHFEMYDHDLDLRNKFKEISKDFDDEAFNVAEYYSKETIDVLEQELQMITHNSFVMGVKIRELADDAVTLKEILKSTLSDTAERIVSNFGFDVNLDDKILDKYKTFERDLADSFLGIGGERLTENELAYIIRKPFISNATHDVQEESSRRAITDIYNAVIDPTRLSVLEVENDNEKFYTTTVVVDDFPLDMEYTHLFEKAQNMPFPVECHVKAKIINNEKVKKKFDRAKINHKQQAKEKQDTGDSASEDVQDNLFVLNQMEREVTGSGVFIEWVFMFVIKSDDYRDCKRKAKRLMKRLKETQIYAVNPLADQLQLFYQCLHGNDLFINKYWLQRTTATGIAENLFGVSQSLGTKTGFYIGRIDKFIRSVSREEAVASSRDIILFSLLLAAKGIKGAVSDSPHVLITGQTGKGKSFLAKLLWIYTSFFKGQMLYWDPKSEFAEWFDRVTESKEMQEKYPLFINHLKTFKYVTLNYEDSTNYGCLDPIVFLDGIEANEMLKSVFDEIKSFENYHHIETAIYQAISDTVEERENGKKVGSLNVIEKLQNNEDEHVKNAGDLLFEKTQNNILKLVFSDGTNPALNIQEKATILQVKGLDMPKADDDTSSYSTSEKNGITLMLLIGKFLEKFGSRRDVQTTIFIDEGWAFSASRQGKKVGKRIKRTGRSENNSLVFITQSVKDKADDDGGNFGCHFAFDEKDEREDILKSLGLEYSKESPENMEMLKDLKKGQCIFSDFYGRVGKMVVHCPFEEMTEAFRTQEDSASSKAEEKFAM
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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