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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS10385 [old locus tag: SAUSA300_1897 ]
- pan locus tag?: SAUPAN004951000
- symbol: SAUSA300_RS10385
- pan gene symbol?: sdcS
- synonym:
- product: sodium-dependent dicarboxylate transporter SdcS
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS10385 [old locus tag: SAUSA300_1897 ]
- symbol: SAUSA300_RS10385
- product: sodium-dependent dicarboxylate transporter SdcS
- replicon: chromosome
- strand: -
- coordinates: 2062471..2064033
- length: 1563
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (2062471..2064033) NCBI
- BioCyc: SAUSA300_RS10385 BioCyc
- MicrobesOnline: see SAUSA300_1897
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1561ATGGCTTATTTCAATCAACATCAATCAATGATATCGAAAAGGTATTTAACATTCTTTTCA
AAATCAAAGAAAAAGAAACCGTTTAGTGCGGGACAACTTATTGGACTAATATTAGGTCCA
TTACTTTTCCTATTAACATTATTATTCTTTCATCCACAAGACTTACCTTGGAAAGGCGTC
TATGTTTTAGCGATTACTTTATGGATTGCGACTTGGTGGATTACTGAAGCAATTCCTATT
GCAGCAACGAGCTTATTACCAATTGTGTTATTACCATTAGGTCATATACTTACACCAGAA
CAAGTATCATCCGAATATGGCAATGATATTATCTTTTTGTTTTTAGGTGGATTTATTTTG
GCAATTGCAATGGAAAGATGGAATTTACATACGAGAGTAGCGTTGACAATTATTAATTTG
ATTGGTGCAAGCACTTCAAAAATATTACTTGGATTCATGGTGGCAACAGGATTCTTATCT
ATGTTTGTATCGAACACTGCAGCTGTAATGATTATGATTCCGATTGGTTTAGCAATTATT
AAGGAAGCACATGATTTACAAGAAGCCAATACGAATCAAACAAGTATTCAAAAGTTTGAA
AAATCTCTAGTTTTAGCAATTGGCTATGCAGGTACGATTGGTGGCTTGGGTACATTAATC
GGAACCCCGCCATTAATTATTTTAAAAGGACAATACATGCAACATTTTGGATATGAAATT
AGTTTTGCTAAATGGATGATTGTAGGGATTCCAACGGTCATTGTTTTGTTAGGTATTACT
TGGCTCTATTTAAGATATGTTGCGTTTAGACATGATTTGAAATATTTACCTGGTGGTCAG
ACGTTAATTAAACAAAAGTTAGACGAGCTTGGCAAAATGAAGTATGAAGAAAAGGTAGTA
CAAACTATCTTTGTACTTGCTAGCTTATTATGGATTACAAGAGAGTTTCTTCTGAAAAAA
TGGGAAGTTACGTCATCTGTTGCAGATGGTACGATTGCTATTTTTATATCAATATTATTA
TTTATTATTCCAGCTAAAAATACTGAAAAACATCGCCGTATCATTGACTGGGAAGTTGCA
AAAGAGCTCCCTTGGGGTGTATTAATTTTATTTGGTGGCGGTTTAGCATTAGCGAAAGGT
ATTTCTGAAAGTGGTTTAGCAAAATGGTTAGGCGAACAGTTGAAATCATTAAATGGTGTT
AGTCCGATTCTTATTGTAATTGTCATAACAATCTTTGTCTTATTTTTAACTGAAGTGACA
TCTAATACTGCAACTGCAACGATGATTTTACCGATTTTAGCAACGTTGTCTGTTGCTGTT
GGAGTGCATCCATTACTACTTATGGCACCTGCAGCTATGGCGGCTAACTGTGCATACATG
TTACCAGTAGGGACACCACCGAATGCAATTATCTTTGGTTCTGGTAAAATATCTATCAAA
CAAATGGCATCAGTAGGATTCTGGGTAAACTTAATCAGTGCAATAATTATTATTTTAGTC
GTGTATTATGTAATGCCTATAGTTTTAGGTATTGATATAAATCAACCACTGCCATTGAAA
TAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS10385 [old locus tag: SAUSA300_1897 ]
- symbol: SAUSA300_RS10385
- description: sodium-dependent dicarboxylate transporter SdcS
- length: 520
- theoretical pI: 9.92004
- theoretical MW: 57197.4
- GRAVY: 0.770385
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Cations and iron carrying compounds transporter, divalent anion:Na+ symporter (DASS) family (TIGR00785; HMM-score: 293.9)Transport and binding proteins Anions transporter, divalent anion:Na+ symporter (DASS) family (TIGR00785; HMM-score: 293.9)
- TheSEED: see SAUSA300_1897
- PFAM: IT (CL0182) Na_sulph_symp; Sodium:sulfate symporter transmembrane region (PF00939; HMM-score: 315.9)and 1 moreCitMHS; Citrate transporter (PF03600; HMM-score: 164.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 15
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002163
- TAT(Tat/SPI): 0.000336
- LIPO(Sec/SPII): 0.020447
- predicted transmembrane helices (TMHMM): 14
⊟Accession numbers[edit | edit source]
- GI: 446245312 NCBI
- RefSeq: WP_000323167 NCBI
- UniProt: see SAUSA300_1897
⊟Protein sequence[edit | edit source]
- MAYFNQHQSMISKRYLTFFSKSKKKKPFSAGQLIGLILGPLLFLLTLLFFHPQDLPWKGVYVLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSKILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHFGYEISFAKWMIVGIPTVIVLLGITWLYLRYVAFRHDLKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFLLKKWEVTSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGIDINQPLPLK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: CcpA see SAUSA300_1897
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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