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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS10960 [old locus tag: SAUSA300_1993 ]
  • pan locus tag?: SAUPAN005283000
  • symbol: SAUSA300_RS10960
  • pan gene symbol?: fruC
  • synonym:
  • product: carbohydrate kinase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS10960 [old locus tag: SAUSA300_1993 ]
  • symbol: SAUSA300_RS10960
  • product: carbohydrate kinase
  • replicon: chromosome
  • strand: -
  • coordinates: 2150067..2151026
  • length: 960
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAGACGTCTATTTTCAATAGGAGAAGCGTTAATTGATTTTATTCCAAATGTTACAAAT
    GCGAATTTAAAAGATGTTCAAACATTTACGAAGCAAATTGGTGGCGCGCCATGCAATGTA
    GCTTGTACAGTTCAAAAGTTAGGACAACAAGCGTATATGATTACACAATTAGGTAATGAT
    GCATTTGGAGATAGCATTATTGAAACGATATCAAGTATTGGTGTAGATGTATCAAAAGTG
    TATCGCACGAATGAAGCAAACACTGCGTTAGCTTTTGTGAGTTTGACTGAAGCGGGCGAG
    CGAGATTTTTCTTTTTATCGTAAGCCCTCTGCTGATATGTTATTTGAACCAAGTTTTGTG
    AATGATATTGATGTGAATGAAAATGATGTAGTACATTTTTGTTCTGTTGATTTGGTCGAT
    AGTCCGATGAGAGATGCACATTATCAATTGATTACCAAAACATTAAATGCAAATGGTACT
    GTCGTATTTGATCCTAATGTAAGATTGCCATTATGGGATAACGCTGAAGATTTAAGACAA
    ACTATTCATACCTTTTTGCCATTGGCGCATATTGTAAAAGTTTCAGATGAAGAATTAGAA
    TTTATTACAGGTATTCATGATGAAAATGAAGCCATTCAATCATTATTTACAGGTAATGTT
    ACTGTAGTCATTTATACGAAGGGAGCAGATGGTGCTGCCGTATATTTGAAAAATGGTATT
    AATCATTATCATAGTGGCTATAAGGTAAAACCTGTTGATACAACTGGGGCAGGGGATGCA
    TTTATTGGTGCAGTTATTAGCAGGATTTTAGCAACCGATGTGTTAAATTTAACTCAGTTA
    TTTGAAAATGAAGGTGAGGAAATTTTAGCGTTTAGCAATCGCGTTGCTGCAATAGTGACA
    ACGAAGTATGGTGCTATTAATAGTTTGCCAACATTACAAGAGGTTGAACAAGCATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS10960 [old locus tag: SAUSA300_1993 ]
  • symbol: SAUSA300_RS10960
  • description: carbohydrate kinase
  • length: 319
  • theoretical pI: 4.38514
  • theoretical MW: 34991.2
  • GRAVY: 0.0134796

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Sugars 5-dehydro-2-deoxygluconokinase (TIGR04382; EC 2.7.1.92; HMM-score: 196.3)
    and 4 more
    Metabolism Energy metabolism Sugars ribokinase (TIGR02152; EC 2.7.1.15; HMM-score: 118.8)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides bifunctional protein RfaE, domain I (TIGR02198; EC 2.7.1.-; HMM-score: 45.1)
    hexose kinase, 1-phosphofructokinase family (TIGR03168; EC 2.7.1.-; HMM-score: 41.5)
    1-phosphofructokinase (TIGR03828; EC 2.7.1.56; HMM-score: 38.2)
  • TheSEED: see SAUSA300_1993
  • PFAM:
    Ribokinase (CL0118) PfkB; pfkB family carbohydrate kinase (PF00294; HMM-score: 279.9)
    and 1 more
    Calycin (CL0116) MxiM; Pilot protein MxiM (PF11441; HMM-score: 14.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.095475
    • TAT(Tat/SPI): 0.003617
    • LIPO(Sec/SPII): 0.005535
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRRLFSIGEALIDFIPNVTNANLKDVQTFTKQIGGAPCNVACTVQKLGQQAYMITQLGNDAFGDSIIETISSIGVDVSKVYRTNEANTALAFVSLTEAGERDFSFYRKPSADMLFEPSFVNDIDVNENDVVHFCSVDLVDSPMRDAHYQLITKTLNANGTVVFDPNVRLPLWDNAEDLRQTIHTFLPLAHIVKVSDEELEFITGIHDENEAIQSLFTGNVTVVIYTKGADGAAVYLKNGINHYHSGYKVKPVDTTGAGDAFIGAVISRILATDVLNLTQLFENEGEEILAFSNRVAAIVTTKYGAINSLPTLQEVEQAF

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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