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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS11955 [old locus tag: SAUSA300_2167 ]
- pan locus tag?: SAUPAN005636000
- symbol: SAUSA300_RS11955
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS11955 [old locus tag: SAUSA300_2167 ]
- symbol: SAUSA300_RS11955
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2347133..2348539
- length: 1407
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (2347133..2348539) NCBI
- BioCyc: SAUSA300_RS11955 BioCyc
- MicrobesOnline: see SAUSA300_2167
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1381ATGAATAATAGTAATTTTTTAAATGTAGAGTTAATAGGTACTAAAATAATAACAATGGAA
GACTTTTATAAAATGAAGGAAGAAGAATTTTTCTTAAAATCTAAGCTACCTTTATATTTA
TATTCCTTCAACTATGTAGATGAATATACAATGAAATTACTTGATAGAGGAAGAATATCT
ATATTAAATACGAAAACAAATAAAGATTGTATATTTGACATTTCAAAGTATATACATGAG
AATATTATATTCAGAAGAGATATATTTGAATTAAATGATATAAGAGATGATGATTTGAAG
TATAAAATTAATGGTTACAATATTGAGGTATACTTAAGTGGTGAATTGGAGAAAATTGTA
AAACATTTATTCGAAAACAAGTTTGATGTAGAGTATGGTTTTTATATTTTATTTATTAAA
CCAATATTTGAAATTGTTTTTTCTTCTAACTATGTTAAAGAAGAATTCAATACAAAAATC
GAATCATCAGAATATAGAGAGAGCTTAGATAGTTTTAATGAAATTTTAATGAAATATCTA
GAAAATGAAATAAATTTCAAAGAAGTATGGAAAAAATATATTGATGAATTATTTAAAAAA
TTAAATGTTCAAAAATTGTTAATTCATAAAAAAATAGAAAGTTTAATATCCTCGTATGAT
AAAAAAATATCTGATGATTGTAGTATGTACTCAAAAGTATTTGAACAATATAAAAAAAAC
GTTGTATTGGATAAAGTATATTACTCTGAAGTTTATAAATATAGTGATAATTTGATAAAA
GTATTCTCTGAAGACGTTTGGAACATAATGGGGTATAAAAAATATAATGAATATTTTACA
AACAGAGATGATACTACATTAAAAATTACTAATTTATATATTGGGCAATCTTTTGGTACA
GAGGGTAATAGAAATGTCATTGATAGAATAGGGAAAGGTCATGAAAAATTACAAGAAATT
ATGACTTATCAGCCAGAAAATAGAAAGACTGTCTTAATATTTTACAAGATACAGCCTGAC
AATATTTATATTACAAACCAATATGGTAAAGAGGCTGTGTCTCGATTAAAAAGAATTTTA
GAGCAAAGTATACCTAATAAAGAATATATTGATTTATCAGAGATATCATTAATTACATTT
TTTAAACCAGAATATAATAAACAACATGTGAATGAGGAGTTTAATTCTTTATCTTCTTCG
AAAATAAAGAATTTAGCCAAAGAAAATGATGGTATTATTATTTATTTAAATTTTAAGGAT
GTTAATTATCAACTGATAAGTGAAGGCAATACTTTTTTTTCTGCAAAACCATATTTGCAT
TGTGTGTTCAATAAAGATATTTTAAATATGGATAAAGTTGATATAGAAAATTTTTTCAAA
AGTATAGAAGTCAAATACAGTAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS11955 [old locus tag: SAUSA300_2167 ]
- symbol: SAUSA300_RS11955
- description: hypothetical protein
- length: 468
- theoretical pI: 6.07485
- theoretical MW: 56150.9
- GRAVY: -0.494231
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_2167
- PFAM: no clan defined DUF445; Protein of unknown function (DUF445) (PF04286; HMM-score: 16.3)and 1 moreDUF2418; Protein of unknown function (DUF2418) (PF10332; HMM-score: 10.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002318
- TAT(Tat/SPI): 0.000136
- LIPO(Sec/SPII): 0.000313
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 486201046 NCBI
- RefSeq: WP_001549616 NCBI
- UniProt: see SAUSA300_2167
⊟Protein sequence[edit | edit source]
- MNNSNFLNVELIGTKIITMEDFYKMKEEEFFLKSKLPLYLYSFNYVDEYTMKLLDRGRISILNTKTNKDCIFDISKYIHENIIFRRDIFELNDIRDDDLKYKINGYNIEVYLSGELEKIVKHLFENKFDVEYGFYILFIKPIFEIVFSSNYVKEEFNTKIESSEYRESLDSFNEILMKYLENEINFKEVWKKYIDELFKKLNVQKLLIHKKIESLISSYDKKISDDCSMYSKVFEQYKKNVVLDKVYYSEVYKYSDNLIKVFSEDVWNIMGYKKYNEYFTNRDDTTLKITNLYIGQSFGTEGNRNVIDRIGKGHEKLQEIMTYQPENRKTVLIFYKIQPDNIYITNQYGKEAVSRLKRILEQSIPNKEYIDLSEISLITFFKPEYNKQHVNEEFNSLSSSKIKNLAKENDGIIIYLNFKDVNYQLISEGNTFFSAKPYLHCVFNKDILNMDKVDIENFFKSIEVKYSK
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.