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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS12385 [old locus tag: SAUSA300_2244 ]
  • pan locus tag?: SAUPAN005759000
  • symbol: SAUSA300_RS12385
  • pan gene symbol?: ureD
  • synonym:
  • product: urease accessory protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS12385 [old locus tag: SAUSA300_2244 ]
  • symbol: SAUSA300_RS12385
  • product: urease accessory protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2409675..2410511
  • length: 837
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGGATGAACAACAATGGACTGGGCAACTTGATTTAACAGTGTTTTTCGATGGCAATCGA
    TCAGTATCAAGAGATATTTTCTTTGAAAAAGCACTTAAAGTGATACGTCCAGTTTATCTA
    AATCAATCTACCATTCCTACATTTTATATAGTAAATGTAGGTGGTGGCTATTTAGATGGA
    GATCGTTACCGTATGAATGTGAATGTCGAAGATAACGCTAAAGTGACATTGACATCTCAA
    GGTGCAACAAAAATATACAAGACACCTTCCAATCATGTTGAGCAGTATCAAACTTTTAAT
    TTGAAAGATAACGCATATTTAGAATATGTCGCTGATCCAATCATCGCATATGAAAATGCT
    AAATTTTATCAACACAATACGTTCAATCTCAATAATTCTAGTTCATTATTTTATACTGAT
    ATTTTAACTCCTGGTTATTCAAAAACTGGCGAAGCCTTCAAGTATCAATATATGCATTTA
    ATAAATGAAATTTATATTGAAGATGAGTTAGTCACATATGATAATTTATTATTGAATCCT
    AATAAACAATCGATCAATGAAATAGGTTATATGGAACATTACTCTCATTATGGCTCTGCT
    TACTTCATACACGAAGATGTTAACCAAAAACTAATCGATTCAGTTTATGAAACCATTAGT
    TCTTATAGCAATACATTCGATTGTCGTGTTGCTATTTCTCAATTGCCTACACATGGTTTT
    GCAGTTAGAATTTTTGCTTATCGCACACAAATTATAGAGAAAATACTTGGAACCATCCAA
    AGCTATATCGCAGAAAATATTTATGATCGTAAACTTGATTTTCTAAGAAAATATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    837


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS12385 [old locus tag: SAUSA300_2244 ]
  • symbol: SAUSA300_RS12385
  • description: urease accessory protein
  • length: 278
  • theoretical pI: 5.13932
  • theoretical MW: 32437.1
  • GRAVY: -0.402158

⊟Function[edit | edit source]

  • reaction:
    EC 3.5.1.5?  ExPASy
    Urease Urea + H2O = CO2 + 2 NH3
  • TIGRFAM:
  • TheSEED: see SAUSA300_2244
  • PFAM:
    no clan defined UreD; UreD urease accessory protein (PF01774; HMM-score: 176.6)
    and 1 more
    Lysozyme (CL0037) Transgly; Transglycosylase (PF00912; HMM-score: 12.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9801
    • Cytoplasmic Membrane Score: 0.012
    • Cell wall & surface Score: 0.0015
    • Extracellular Score: 0.0064
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003582
    • TAT(Tat/SPI): 0.000707
    • LIPO(Sec/SPII): 0.000454
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MDEQQWTGQLDLTVFFDGNRSVSRDIFFEKALKVIRPVYLNQSTIPTFYIVNVGGGYLDGDRYRMNVNVEDNAKVTLTSQGATKIYKTPSNHVEQYQTFNLKDNAYLEYVADPIIAYENAKFYQHNTFNLNNSSSLFYTDILTPGYSKTGEAFKYQYMHLINEIYIEDELVTYDNLLLNPNKQSINEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSNTFDCRVAISQLPTHGFAVRIFAYRTQIIEKILGTIQSYIAENIYDRKLDFLRKY

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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