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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS12765 [old locus tag: SAUSA300_2310 ]
  • pan locus tag?: SAUPAN005872000
  • symbol: SAUSA300_RS12765
  • pan gene symbol?: —
  • synonym:
  • product: LytTR family transcriptional regulator

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS12765 [old locus tag: SAUSA300_2310 ]
  • symbol: SAUSA300_RS12765
  • product: LytTR family transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: 2483093..2483536
  • length: 444
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGATGAAACTCAATTTATTTATCAATGCAAATGAGACGGAATCTTATATTGATATACAT
    GCACCTAAAATGAATGATAACGTTCAAAGTATTATTAATGCAGTCAATGATTTAGACAAA
    TCACATACATTAGTCGGATACATAGACAAAGAAATCCATATCATTAATGTATCAGATGTT
    ATAACATTCCAAGTTATTAATAAAAATGTAACAGCCATTACAAGCAATCAAAAATTCAAA
    CTAAAATTACGACTTTATGAACTAGAAAAACAGTTACCACAACATTTCATTCGCATTTCC
    AAATCAGAAATCGTCAACAAGTATTACATTGAAAAATTATTATTAGAGCCAAATGGACTT
    ATACGTATGTATCTTAAAGATGCACACTACACCTATTCTTCTAGACGTTATTTAAAATCT
    ATAAAGGAGCGCTTATCAATATGA
    60
    120
    180
    240
    300
    360
    420
    444

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS12765 [old locus tag: SAUSA300_2310 ]
  • symbol: SAUSA300_RS12765
  • description: LytTR family transcriptional regulator
  • length: 147
  • theoretical pI: 9.75719
  • theoretical MW: 17316
  • GRAVY: -0.293197

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SAUSA300_2310
  • PFAM:
    Tudor (CL0049) LytTR; LytTr DNA-binding domain (PF04397; HMM-score: 76.6)
    and 1 more
    no clan defined Cnn_1N; Centrosomin N-terminal motif 1 (PF07989; HMM-score: 14.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004049
    • TAT(Tat/SPI): 0.000117
    • LIPO(Sec/SPII): 0.000505
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MMKLNLFINANETESYIDIHAPKMNDNVQSIINAVNDLDKSHTLVGYIDKEIHIINVSDVITFQVINKNVTAITSNQKFKLKLRLYELEKQLPQHFIRISKSEIVNKYYIEKLLLEPNGLIRMYLKDAHYTYSSRRYLKSIKERLSI

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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