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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS13625 [old locus tag: SAUSA300_2456 ]
- pan locus tag?: SAUPAN006161000
- symbol: SAUSA300_RS13625
- pan gene symbol?: —
- synonym:
- product: membrane protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS13625 [old locus tag: SAUSA300_2456 ]
- symbol: SAUSA300_RS13625
- product: membrane protein
- replicon: chromosome
- strand: +
- coordinates: 2653766..2654671
- length: 906
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (2653766..2654671) NCBI
- BioCyc: SAUSA300_RS13625 BioCyc
- MicrobesOnline: see SAUSA300_2456
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901ATGCATACAGGTCATCATCTAAAGTCCAGAAATCATTCTGATTCAATTAACTATTTCTTA
TACCCCTCTATTGCAAGAGGTTTTGATATTATTTTAACAATGTTTATGTTGTCTTTAGCT
ATTATTATGACTGCAGGTGGTGCGTCAACCATTCATCAAAGTTTCAACTTACCGTATTGG
CTGAGCGCACTCATATTAGTCGCCTTTATTTTAGCAACACTGTTTCTAAAATTCGATCGT
TTAATTGCTGTGCTTGGCGGTGTTACCCCATTTTTAATTGCGATTGTCATTATGATTGCG
GTCTACTATTTCACAACAAGTCATCTTGATTTTACTGCCGCTAATAATGATGCTCAGATT
CATAAGCAGAAATCATTATCACCTGGATGGTGGTTTGATGCGATTAACTATGCAAGCTTG
CAAATTGCTGCTGCCTTCAGCTTCTTATCAGTGATGGGTAGTAAAGTTAAATATCGTGAC
TCAACGTTATACGGGGGCTTGATTGGCGGTTTAATCATTACATTTTTACTCATGATGATT
AATCTAGGTTTAATTTCTCAATTCGATAAAATTAAACACGTAGATCTACCTACATTAAAA
TTAGCGACACAAATGTCTCCGTCAATTGGTATTATTATGTCTGTCATTATGATACTTGTC
ATCTACAATACTGTTGTTGGATTAATGTATGCATTTGCGTCACGTTTCAGCGTTCCATTC
AGCAGACGTTACTTCATCATTATTATTACAATGGCTGTCATCACTTATATTAGTACATTT
ATCGGTTTCATTTCATTAATTGGAAAAGTATTCCCTATTATGGGATTGTTCGGTTTCATC
TTACTCATACCTGTACTCTATAAAGGTTTAATTAAGCGTATTACCGGCAAATCTCATATC
GATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS13625 [old locus tag: SAUSA300_2456 ]
- symbol: SAUSA300_RS13625
- description: membrane protein
- length: 301
- theoretical pI: 10.2106
- theoretical MW: 33521
- GRAVY: 0.876744
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_2456
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 8
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.01262
- TAT(Tat/SPI): 0.000818
- LIPO(Sec/SPII): 0.006642
- predicted transmembrane helices (TMHMM): 8
⊟Accession numbers[edit | edit source]
- GI: see SAUSA300_2456
- RefSeq: WP_011443661 NCBI
- UniProt: see SAUSA300_2456
⊟Protein sequence[edit | edit source]
- MHTGHHLKSRNHSDSINYFLYPSIARGFDIILTMFMLSLAIIMTAGGASTIHQSFNLPYWLSALILVAFILATLFLKFDRLIAVLGGVTPFLIAIVIMIAVYYFTTSHLDFTAANNDAQIHKQKSLSPGWWFDAINYASLQIAAAFSFLSVMGSKVKYRDSTLYGGLIGGLIITFLLMMINLGLISQFDKIKHVDLPTLKLATQMSPSIGIIMSVIMILVIYNTVVGLMYAFASRFSVPFSRRYFIIIITMAVITYISTFIGFISLIGKVFPIMGLFGFILLIPVLYKGLIKRITGKSHID
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.