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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS14245 [old locus tag: SAUSA300_2560 ]
- pan locus tag?: SAUPAN006340000
- symbol: SAUSA300_RS14245
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS14245 [old locus tag: SAUSA300_2560 ]
- symbol: SAUSA300_RS14245
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2770658..2770858
- length: 201
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (2770658..2770858) NCBI
- BioCyc: SAUSA300_RS14245 BioCyc
- MicrobesOnline: see SAUSA300_2560
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGATACTAGTAATGTTATCTCCATTATTAATCATATTCTTTATAGTGTTGTCTATTTTA
GAAGAGCGTAAACGTACGAAGAAAAAGCAACTCGAGAAAGAAAAAGCAAATACACTAAAT
CAAAATACAAATGACACGGAAAGTTCAAATCAAGAGCCGTCATTGCAGCAGGATAAAGAA
CAAAAAGATAACAAAGGATAA60
120
180
201
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS14245 [old locus tag: SAUSA300_2560 ]
- symbol: SAUSA300_RS14245
- description: hypothetical protein
- length: 66
- theoretical pI: 9.17593
- theoretical MW: 7687.8
- GRAVY: -0.836364
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Adaptations to atypical conditions phage shock protein B (TIGR02976; HMM-score: 14)Cellular processes Sporulation and germination stage III sporulation protein AF (TIGR02896; HMM-score: 12.3)and 1 moreTransport and binding proteins Carbohydrates, organic alcohols, and acids D-galactonate transporter (TIGR00893; HMM-score: 10.1)
- TheSEED: see SAUSA300_2560
- PFAM: no clan defined DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 21.2)DUF1510; Protein of unknown function (DUF1510) (PF07423; HMM-score: 19.7)Di19_C; Stress-induced protein Di19, C-terminal (PF14571; HMM-score: 19.1)and 16 moreTMEM156; TMEM156 protein family (PF15106; HMM-score: 16)Transporter (CL0375) Connexin; Connexin (PF00029; HMM-score: 14.8)no clan defined Cadherin_C_2; Cadherin cytoplasmic C-terminal (PF16492; HMM-score: 14.7)OSTbeta; Organic solute transporter subunit beta protein (PF15048; HMM-score: 14.1)EphA2_TM; Ephrin type-A receptor 2 transmembrane domain (PF14575; HMM-score: 13.8)YajC; Preprotein translocase subunit (PF02699; HMM-score: 13.4)GRP; Glycine rich protein family (PF07172; HMM-score: 13.4)Ctr; Ctr copper transporter family (PF04145; HMM-score: 13.1)OAD_gamma; Oxaloacetate decarboxylase, gamma chain (PF04277; HMM-score: 12.9)DUF4725; Domain of unknown function (DUF4725) (PF15854; HMM-score: 12.9)Ninjurin; Ninjurin (PF04923; HMM-score: 12.5)MotB_plug; Membrane MotB of proton-channel complex MotA/MotB (PF13677; HMM-score: 12.1)CLN3; CLN3 protein (PF02487; HMM-score: 11.9)GPCR_A (CL0192) SID-1_RNA_chan; dsRNA-gated channel SID-1 (PF13965; HMM-score: 11.7)7tm_1; 7 transmembrane receptor (rhodopsin family) (PF00001; HMM-score: 11.1)no clan defined TMEM154; TMEM154 protein family (PF15102; HMM-score: 11)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helix: 1
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.257112
- TAT(Tat/SPI): 0.001775
- LIPO(Sec/SPII): 0.196041
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI: 446527382 NCBI
- RefSeq: WP_000604728 NCBI
- UniProt: see SAUSA300_2560
⊟Protein sequence[edit | edit source]
- MILVMLSPLLIIFFIVLSILEERKRTKKKQLEKEKANTLNQNTNDTESSNQEPSLQQDKEQKDNKG
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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