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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS14790 [old locus tag: SAUSA300_pUSA030011 ]
- pan locus tag?:
- symbol: SAUSA300_RS14790
- pan gene symbol?: —
- synonym:
- product: membrane protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS14790 [old locus tag: SAUSA300_pUSA030011 ]
- symbol: SAUSA300_RS14790
- product: membrane protein
- replicon: pUSA03
- strand: +
- coordinates: 11030..11347
- length: 318
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_007792 (11030..11347) NCBI
- BioCyc: SAUSA300_RS14790 BioCyc
- MicrobesOnline: see SAUSA300_pUSA030011
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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301ATGATTAAAAAATTCAGTTTAACAACTGTTTATGTAGCATTTTTAAGCATTGTTTTATCA
AATATAACACTTGGCGCAGAAAATCCAGGGCCGAAAATTGAACAAGGTTTACAACAAGTA
CAAACATTCTTAACAGGCCTAATTGTTGCTGTTGGTATCTGTGCTGGTGTTTGGATAGTT
CTTAAAAAATTACCTGGAATTGATGATCCAATGGTAAAAAATGAAATGTTTAGAGGCGTT
GGAATGGTATTAGCTGGTGTGGCTGTTGGGGCAGCACTTGTTTGGTTGGTTCCATGGGTA
TACAACCTTTTCCAATAA60
120
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318
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS14790 [old locus tag: SAUSA300_pUSA030011 ]
- symbol: SAUSA300_RS14790
- description: membrane protein
- length: 105
- theoretical pI: 9.19725
- theoretical MW: 11317.6
- GRAVY: 0.862857
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_pUSA030011
- PFAM: no clan defined T4SS_CagC; Cag pathogenicity island, type IV secretory system (PF16943; HMM-score: 62.8)and 5 moreTrbC; TrbC/VIRB2 family (PF04956; HMM-score: 23.6)DUF2157; Predicted membrane protein (DUF2157) (PF09925; HMM-score: 21.1)Maff2; Maff2 family (PF12750; HMM-score: 14.2)SecE; SecE/Sec61-gamma subunits of protein translocation complex (PF00584; HMM-score: 10.4)O-anti_assembly (CL0499) Wzy_C; O-Antigen ligase (PF04932; HMM-score: 8.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- LocateP:
- SignalP: Signal peptide SP(Sec/SPI) length 25 aa
- SP(Sec/SPI): 0.696851
- TAT(Tat/SPI): 0.001428
- LIPO(Sec/SPII): 0.076762
- Cleavage Site: CS pos: 25-26. TLG-AE. Pr: 0.4498
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
- GI: 446514276 NCBI
- RefSeq: WP_000591622 NCBI
- UniProt: see SAUSA300_pUSA030011
⊟Protein sequence[edit | edit source]
- MIKKFSLTTVYVAFLSIVLSNITLGAENPGPKIEQGLQQVQTFLTGLIVAVGICAGVWIVLKKLPGIDDPMVKNEMFRGVGMVLAGVAVGAALVWLVPWVYNLFQ
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.