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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS00090 [old locus tag: SAP020 ]
- pan locus tag?:
- symbol: SA_RS00090
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA_RS00090 [old locus tag: SAP020 ]
- symbol: SA_RS00090
- product: hypothetical protein
- replicon: pN315
- strand: +
- coordinates: 16871..18805
- length: 1935
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1921ATGAAAAAATTCAAATTATTTTTAGATTTTAGTACTTTATTATTAATTTCAGGGCTATTA
TTTTTATTTTTCTTCAAAGAAAATGAAGAAATTATACCTGAAAGTTCCAATATTTTAACA
ATCTCTAATTGGGATAAATCTAACAGTAAATCAAAAGTGTTAGATGTCATTGAATCAGGC
GCCAAAAATCAAAATATACAAATAATTAAATCCGTTAAAGATTTTGATAATAAAAAAGAA
TTTTTTGTTTTCAACTCAAAACGAAATAATTCTGACTTTATACGTAATAAAACATCACTT
TTAACTCCATCAGATTTATTAAACAGAGAGATAAAAGGAAAGTATTATATTATTGGCGAA
CATTTCAATGTAGAAGAGCTTACGAGTGAATTAAAAAAAGCTGGTTTAACATCTGAAGTT
GAATACATAAATAGAAACATATTATTTTTTGAATTAGTCATAGATAATGATTTATTAGTG
CCTTTCATATTCTTAGGCGTATTATATCTTTTGTACTTCTTATATGACAGAGGATATAAT
TTGAAATTTTATGCTATTCAAAAGCTACATGGCTTTTCAACTACACGCATTATTTTTCAT
AATATTCATATAAAAATCATTTATTGGCTAGTACTTACCACTATTTTCTTTATTGCTAAT
ATATTAATCATTCATATAGCCAATTTAGAATTGGATTTCTTAATGTTTATTCGTAGATTT
ATCGTGTTGCTTTTTGTTTTTGCTTGTATTACTACATTGTTGTGGCTGATTTCGTATAGT
CTTCTTTTGAAGTTAAGTATTCCATTAACCTTAAAAGGGAAAAAAGGATATAAGTTTTCA
ATATTTATGGGTACCTTCACCAAATGTATCATGGTGCTAATACTATCTTTTTTACTGGCA
CAAAATTTAAATGCTTATACGAAGTTAAAGAATATATATGACTCTGAAAAAATCTGGCAA
AAGTTAGATAATTACTATACATTAGAGATTTCTCCTAATATTAGAAATTCAGAAGAAAAA
CAAATTTTAGAAACTAATATATACAATTTAATTAAGAAAAGCGAACAACTTGGTGGATTG
CTTTTAAAGAATAATAATATAGCCAATCCCGATAAAAACAATTACATTCCTGAAAATGGC
AATGTCTTTTTTATCAATAACAATTTTCTGAATTTCTATAAAAATATAAATCATGATTTT
AAAATGATTGACAATCATTCGGATAAAATAAACGTGTTTATTCCTCCAAGGTTACAATAT
CAAAAATCTGAAATTCAAAAAAATCACCAAGGATGGATTGACTTTCAAAAGCAACAAAAC
AAAAAAGTAGATGTGCAAGTACTGTCAAAAAACGTATCTGTTTTTTCTTTTGATCGCACA
ACTAATTTGAAATTTGGATATCTAGATTCTCCAATAGTAATGTTGTTGACACCTGACGAT
TTAACAGGAGATTTTTATTTAGCTGCTGTTTCTCAAGGTGGATATCTATTTAAAGATTTA
GATACACTTAAACAGTTGCTTAAAGATAATCACCTAGAAGAAGAAATTAGCGGTATAACT
AATTACAAGGATTCTGTGTTAAATGAATTAAATGAAACGAAAACAAAAATGATAATAACA
ATAGTTACTATTATTATTAACGTTTTCATTCTTTTGATAGCTACTGTATTTGAAACAATT
CAATATTTTAGCTGGAATAAAAAGCAACTATTATTAAGAAAAATTCATGGTTATTCATTA
TTCAGCAGTAATGTACGTTATTTAACAATTTCTATTTTACTTTCTATTATGTTAGCTTAC
ACTACGCATATTTTATTTGGTTCAAAGATATTACTATTCATAATAATGTCTATTGCTATT
ATTCAACATTTACTTCAAATTGCTTATATTAAATATCTTGAAAAATACTTTAAAGATTTA
ATGAGGGAGATTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS00090 [old locus tag: SAP020 ]
- symbol: SA_RS00090
- description: hypothetical protein
- length: 644
- theoretical pI: 9.57653
- theoretical MW: 75479
- GRAVY: 0.131677
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Toxin production and resistance bacteriocin-associated integral membrane protein (TIGR01654; HMM-score: 238)
- TheSEED: see SAP020
- PFAM: BPD_transp_1 (CL0404) DUF1430; Protein of unknown function (DUF1430) (PF07242; HMM-score: 69.2)and 3 moreno clan defined CD34_antigen; CD34/Podocalyxin family (PF06365; HMM-score: 22.7)Eaf7; Chromatin modification-related protein EAF7 (PF07904; HMM-score: 15)Cache (CL0165) DUF2222; Uncharacterised signal transduction histidine kinase domain (DUF2222) (PF09984; HMM-score: 14.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 7
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.171789
- TAT(Tat/SPI): 0.000753
- LIPO(Sec/SPII): 0.03148
- predicted transmembrane helices (TMHMM): 8
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKKFKLFLDFSTLLLISGLLFLFFFKENEEIIPESSNILTISNWDKSNSKSKVLDVIESGAKNQNIQIIKSVKDFDNKKEFFVFNSKRNNSDFIRNKTSLLTPSDLLNREIKGKYYIIGEHFNVEELTSELKKAGLTSEVEYINRNILFFELVIDNDLLVPFIFLGVLYLLYFLYDRGYNLKFYAIQKLHGFSTTRIIFHNIHIKIIYWLVLTTIFFIANILIIHIANLELDFLMFIRRFIVLLFVFACITTLLWLISYSLLLKLSIPLTLKGKKGYKFSIFMGTFTKCIMVLILSFLLAQNLNAYTKLKNIYDSEKIWQKLDNYYTLEISPNIRNSEEKQILETNIYNLIKKSEQLGGLLLKNNNIANPDKNNYIPENGNVFFINNNFLNFYKNINHDFKMIDNHSDKINVFIPPRLQYQKSEIQKNHQGWIDFQKQQNKKVDVQVLSKNVSVFSFDRTTNLKFGYLDSPIVMLLTPDDLTGDFYLAAVSQGGYLFKDLDTLKQLLKDNHLEEEISGITNYKDSVLNELNETKTKMIITIVTIIINVFILLIATVFETIQYFSWNKKQLLLRKIHGYSLFSSNVRYLTISILLSIMLAYTTHILFGSKILLFIIMSIAIIQHLLQIAYIKYLEKYFKDLMREI
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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