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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS01120 [old locus tag: SA0188 ]
  • pan locus tag?: SAUPAN001037000
  • symbol: SA_RS01120
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS01120 [old locus tag: SA0188 ]
  • symbol: SA_RS01120
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 221933..222214
  • length: 282
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (221933..222214) NCBI
  • BioCyc: SA_RS01120 BioCyc
  • MicrobesOnline: see SA0188

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGGTGTTAATTACCTATCAAATCATTTTATTTTTTATTATTAGTCTAAGTTACTATTTA
    ACTTTAAATCATTACATGGCAGTCACTGTAGGTAACTTCACTTCAATATTCGGCATGTTC
    GCAGCCATACTCTTTATGTACTACTACCTACTCTATAAAAGTCCCGAATACAATCAACGC
    AAACGATTTAAACATTTCATTCATATCACTAATTTGATAATAATTGCTTTTAGCACCTTC
    GTATTAGTTCATTTAGCATTAAAATTATTCTTCAGCATTTAA
    60
    120
    180
    240
    282

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS01120 [old locus tag: SA0188 ]
  • symbol: SA_RS01120
  • description: hypothetical protein
  • length: 93
  • theoretical pI: 9.91925
  • theoretical MW: 11126.4
  • GRAVY: 1.01183

⊟Function[edit | edit source]

  • TIGRFAM:
    exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 7.1)
  • TheSEED: see SA0188
  • PFAM:
    no clan defined DUF3341; Protein of unknown function (DUF3341) (PF11821; HMM-score: 12.1)
    FAD_DHS (CL0085) PNTB; NAD(P) transhydrogenase beta subunit (PF02233; HMM-score: 12)
    and 2 more
    Marvel-like (CL0396) MARVEL; Membrane-associating domain (PF01284; HMM-score: 9.2)
    no clan defined DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 6.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001778
    • TAT(Tat/SPI): 0.000197
    • LIPO(Sec/SPII): 0.031669
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MVLITYQIILFFIISLSYYLTLNHYMAVTVGNFTSIFGMFAAILFMYYYLLYKSPEYNQRKRFKHFIHITNLIIIAFSTFVLVHLALKLFFSI

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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