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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS01575 [old locus tag: SA0268 ]
  • pan locus tag?: SAUPAN001166000
  • symbol: SA_RS01575
  • pan gene symbol?: —
  • synonym:
  • product: ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS01575 [old locus tag: SA0268 ]
  • symbol: SA_RS01575
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 322844..324010
  • length: 1167
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (322844..324010) NCBI
  • BioCyc: SA_RS01575 BioCyc
  • MicrobesOnline: see SA0268

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATTGAAAAAGTGGTATTTG
    ATTATCTATTTACTATTTATCTTAGCGGCACTCCTTATTACATTAACGACGATCCAACAT
    GTAACAGAAGATGACAATCATTTTAATATAGGTGTCGTAGATAAAGATCAATCAAGTGAA
    ACGAAATTAATCTTAAACTCTATTGGTAAAGGGAGTAACCTAGGAAAAAATGTAAGCATT
    AAAGCATATGATGATAAGCAAGCACATACTTTGTTAAAAAAACATAAACTTCAAGGCTAT
    TTTGTTTTTGATAAAGGTATGACCAAGGCATTTTATAAACAAGGCGAACTACCAATTTCA
    GTATATACATATGATCAACAATCCATGAAAAGTGTCGTGCTATCTCAGCTAACAGATTCT
    GTTTACCAACGTCTTATGCGATCAATGGGTGGCATCTTAGCTTTTCAAGACTTAGCACCG
    AAAGCATCACATTCTGACAGTATCAATGTTATGACTGATTTGCTGATTACAGGATTAAAC
    CGTTCAGGTGCATTTAACTTAGAACCGATTCATTTATACGATACGGGCAGTTATTATGCA
    ATTACAGGATTTTTAGCAACGGTATTCATCTTTGCACTATCTTTATTTACAGTTTTGAAA
    ATGAATCAAGATACTGTATTGAAAGCGCGATTGAAAATGTTTCATTTTTCTAAAGAGCGT
    TTATTAATCATTCGTGCGTTGATTACATGGTTTTATACTATGTTATGGAGTATCGTTGGT
    GTAGTTTGGATTGTGTTCAGTATTCCGAATACCTTTGAATTATATAATTGGCCAACGTTA
    GCCATTCATTTAAGCTATTATGTTACCTTTTTAATACTGTGGTTATTACTCATCGAACTT
    TTAACAACAGGCTTGTTGAATAGTATTAGTAAAGTCATATTAGCTATTGTCATCCTGGTG
    TTATCTGGTTTAACAATACCTACGATTTTTTTACAACATATAGCAAATGGCGTTTTCAAT
    ATTCAACCGTTCGCAGTTGTAACAAATCAATTGTTAGAAATTATTTTAAACAACTACATT
    TTAGAACTGCACCCTAGTTTCTATCTTAGCTTCATCGCACTTTTGATAATTAATTTAGCT
    GTATTGGTTTGGAGGTATCGTCAATGA
    60
    120
    180
    240
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    360
    420
    480
    540
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    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1167

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS01575 [old locus tag: SA0268 ]
  • symbol: SA_RS01575
  • description: ABC transporter permease
  • length: 388
  • theoretical pI: 9.70298
  • theoretical MW: 44463.3
  • GRAVY: 0.529381

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA0268
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 82.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.038901
    • TAT(Tat/SPI): 0.000463
    • LIPO(Sec/SPII): 0.017222
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKTIHLFRIYHSFLLKKWYLIIYLLFILAALLITLTTIQHVTEDDNHFNIGVVDKDQSSETKLILNSIGKGSNLGKNVSIKAYDDKQAHTLLKKHKLQGYFVFDKGMTKAFYKQGELPISVYTYDQQSMKSVVLSQLTDSVYQRLMRSMGGILAFQDLAPKASHSDSINVMTDLLITGLNRSGAFNLEPIHLYDTGSYYAITGFLATVFIFALSLFTVLKMNQDTVLKARLKMFHFSKERLLIIRALITWFYTMLWSIVGVVWIVFSIPNTFELYNWPTLAIHLSYYVTFLILWLLLIELLTTGLLNSISKVILAIVILVLSGLTIPTIFLQHIANGVFNIQPFAVVTNQLLEIILNNYILELHPSFYLSFIALLIINLAVLVWRYRQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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