From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS01665 [old locus tag: SA0286 ]
  • pan locus tag?: SAUPAN001200000
  • symbol: SA_RS01665
  • pan gene symbol?: —
  • synonym:
  • product: TIGR01741 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS01665 [old locus tag: SA0286 ]
  • symbol: SA_RS01665
  • product: TIGR01741 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 343185..343685
  • length: 501
  • essential: no DEG

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (343185..343685) NCBI
  • BioCyc: SA_RS01665 BioCyc
  • MicrobesOnline: see SA0286

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGACTTTCGAAGAAAAATTAAGTCAAATGTACAACGAGATTGCGAATAAGATTAGTAGC
    ATGATACCAGTAGAGTGGGAAAAAGTATATACAATGGCTTATATAGATGATGAAGGTGGA
    GAAGTGTTCTACTATTACACAGAACCTGGAAGCAATGAATTATACTACTATACTAGTGTA
    TTAAATAAATATGATATATCGGAATCAGAATTTATGGACTCAGCGTATGAGTTGTATAAA
    CAATTTCAAAATTTAAGAAATATATTTAAAGAAGAAGGATATGAACCATGGACATCATGC
    GAATTTGATTTTACAAAAGAAGGTGAATTAAAAGTTTCATTTGATTATATAGATTGGATC
    AATACAGAGTTTGATCAATTGGGCCGTCAAAATTATTATATGTACAAAAAATTTGGGGTT
    ATACCAGAAATGGAATATGAAATGGAAGAAGTTAAAGAAATCGAACAATATATTAAAGAG
    CAAGAAGAAGCTGAACAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    501

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS01665 [old locus tag: SA0286 ]
  • symbol: SA_RS01665
  • description: TIGR01741 family protein
  • length: 166
  • theoretical pI: 3.84003
  • theoretical MW: 20265.3
  • GRAVY: -0.818675

⊟Function[edit | edit source]

  • TIGRFAM:
    conserved hypothetical protein (TIGR01741; HMM-score: 251.2)
  • TheSEED: see SA0286
  • PFAM:
    no clan defined DUF600; Protein of unknown function, DUF600 (PF04634; HMM-score: 160.1)
    and 1 more
    DUF4296; Domain of unknown function (DUF4296) (PF14129; HMM-score: 8.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008406
    • TAT(Tat/SPI): 0.000639
    • LIPO(Sec/SPII): 0.000725
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTFEEKLSQMYNEIANKISSMIPVEWEKVYTMAYIDDEGGEVFYYYTEPGSNELYYYTSVLNKYDISESEFMDSAYELYKQFQNLRNIFKEEGYEPWTSCEFDFTKEGELKVSFDYIDWINTEFDQLGRQNYYMYKKFGVIPEMEYEMEEVKEIEQYIKEQEEAEQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS01665&oldid=100967"