From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03325 [old locus tag: SA0576 ]
  • pan locus tag?: SAUPAN002491000
  • symbol: SA_RS03325
  • pan gene symbol?: sroA
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS03325 [old locus tag: SA0576 ]
  • symbol: SA_RS03325
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 669034..669237
  • length: 204
  • essential: no DEG

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (669034..669237) NCBI
  • BioCyc: SA_RS03325 BioCyc
  • MicrobesOnline: see SA0576

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGAGTAAAATAAACCACATCACTATTGTATTATCATTTACTAAAGTAGACGCTAACGGC
    AAACAAACAGAATTTAAGCGTCGATTCGCTAACATTAACCCTGATGCATCAAACGACCAA
    ATTAAAACATTCAGCAAACTTATTGAGCGACTTACTGGAGAAACATATAACAATATCGAA
    CTCATCAAATCTTTATCAATTTAA
    60
    120
    180
    204


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS03325 [old locus tag: SA0576 ]
  • symbol: SA_RS03325
  • description: hypothetical protein
  • length: 67
  • theoretical pI: 10.2144
  • theoretical MW: 7656.72
  • GRAVY: -0.392537

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA0576
  • PFAM:
    no clan defined DUF1659; Protein of unknown function (DUF1659) (PF07872; HMM-score: 20.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0954
    • Cytoplasmic Membrane Score: 0.0058
    • Cell wall & surface Score: 0.0009
    • Extracellular Score: 0.898
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.04421
    • TAT(Tat/SPI): 0.001917
    • LIPO(Sec/SPII): 0.006988
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSKINHITIVLSFTKVDANGKQTEFKRRFANINPDASNDQIKTFSKLIERLTGETYNNIELIKSLSI

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS03325&oldid=147603"