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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03570 [old locus tag: SA0623 ]
  • pan locus tag?: SAUPAN002548000
  • symbol: SA_RS03570
  • pan gene symbol?: sarX
  • synonym:
  • product: MarR family transcriptional regulator

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS03570 [old locus tag: SA0623 ]
  • symbol: SA_RS03570
  • product: MarR family transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: 720416..720841
  • length: 426
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (720416..720841) NCBI
  • BioCyc: SA_RS03570 BioCyc
  • MicrobesOnline: see SA0623

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGGCAAAAAAATTTAAGATAATAATGACAGAAGCATTGTCTTTATATATTTGGGGGTGC
    AACATTTTGAATACTGAGAAATTAGAAACATTGCTTGGCTTCTATAAACAATATAAAGCA
    TTATCTGAATATATTGATAAAAAATATAAGTTGTCGCTAAATGATTTAGCAGTCTTAGAT
    TTAACGATGAAGCATTGCAAAGATGAAAAAGTACTTATGCAATCATTTTTAAAAACTGCA
    ATGGATGAGCTAGATTTAAGTAGGACAAAATTATTAGTTTCTATAAGAAGACTAATTGAA
    AAAGAAAGACTTAGTAAAGTTAGATCATCTAAAGATGAGCGTAAAATTTATATTTATTTA
    AATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAAT
    ATTTAA
    60
    120
    180
    240
    300
    360
    420
    426

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS03570 [old locus tag: SA0623 ]
  • symbol: SA_RS03570
  • description: MarR family transcriptional regulator
  • length: 141
  • theoretical pI: 9.27457
  • theoretical MW: 16716.6
  • GRAVY: -0.253901

⊟Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions staphylococcal accessory regulator family (TIGR01889; HMM-score: 108.4)
    and 1 more
    Genetic information processing Protein synthesis tRNA aminoacylation histidine--tRNA ligase (TIGR00442; EC 6.1.1.21; HMM-score: 10.8)
  • TheSEED: see SA0623
  • PFAM:
    HTH (CL0123) Staph_reg_Sar_Rot; Transcriptional regulator SarA/Rot (PF22381; HMM-score: 77.6)
    and 2 more
    TPR (CL0020) HPS6_C; Hermansky-Pudlak syndrome 6 protein C-terminal domain (PF20468; HMM-score: 14.1)
    HTH (CL0123) HTH_27; Winged helix DNA-binding domain (PF13463; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9098
    • Cytoplasmic Membrane Score: 0.0175
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0724
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018804
    • TAT(Tat/SPI): 0.000518
    • LIPO(Sec/SPII): 0.449016
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAKKFKIIMTEALSLYIWGCNILNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKHCKDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNNDDISKFNALFEDVEQFLNI

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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