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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus N315
locus tag: SA_RS03870 [old locus tag: SA0680 ]
pan locus tag^?: SAUPAN002614000
symbol: SA_RS03870
pan gene symbol^?: —
synonym:
product: 5'-3'-deoxyribonucleotidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SA_RS03870 [old locus tag: SA0680 ]
symbol: SA_RS03870
product: 5'-3'-deoxyribonucleotidase
replicon: chromosome
strand: +
coordinates: 776469..777011
length: 543
essential: no DEG other strains

⊟Accession numbers[edit | edit source]

Location: NC_002745 (776469..777011) NCBI
BioCyc: SA_RS03870 BioCyc
MicrobesOnline: see SA0680

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
361
421
481
541
ATGACCCGTAAATCAATCGCGATTGATATGGATGAAGTATTGGCAGATACATTAGGAGAA
ATCATTGATGCTGTCAATTTTAGAGCGGATTTAGGTATTAAAATGGAAGCTTTGAATGGT
CAAAAACTTAAACATGTTATTCCTGAACATGATGGATTAATTACAGAAGTATTGAGAGAA
CCAGGCTTCTTCAGACATCTTAAAGTGATGCCACATGCACAAGAAGTTGTGAAAAAATTA
ACTGAACATTATGATGTATATATTGCTACAGCAGCAATGGATGTACCAACATCATTTAGT
GATAAATATGAATGGTTACTAGAGTTCTTTCCATTTTTAGATCCTCAGCATTTTGTTTTT
TGTGGTAGAAAAAACATCGTTAAAGCTGATTATTTAATAGATGACAATCCTAGACAGCTT
GAAATTTTTACTGGTACACCGATTATGTTTACAGCAGTGCATAATATTAATGATGATCGA
TTTGAACGCGTAAATAGCTGGAAAGATGTAGAACAGTATTTTTTAGATAATATTGAGAAA
TAA
60
120
180
240
300
360
420
480
540
543

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SA_RS03870 [old locus tag: SA0680 ]
symbol: SA_RS03870
description: 5'-3'-deoxyribonucleotidase
length: 180
theoretical pI: 4.81742
theoretical MW: 20960.9
GRAVY: -0.242778

⊟Function[edit | edit source]

reaction:
EC 3.1.3.-? ExPASy
TIGRFAM:
TheSEED: see SA0680
PFAM:
HAD (CL0137) NT5C; 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) (PF06941; HMM-score: 122.5)
and 1 more
NIF; NLI interacting factor-like phosphatase (PF03031; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors: Mg²⁺
effectors:

⊟Localization[edit | edit source]

PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
LocateP:
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00235
- TAT(Tat/SPI): 0.000241
- LIPO(Sec/SPII): 0.000272
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 446119407 NCBI
RefSeq: WP_000197262 NCBI
UniProt: see SA0680

⊟Protein sequence[edit | edit source]

MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK

⊟Experimental data[edit | edit source]

experimentally validated: data available for COL
protein localization: data available for COL
quantitative data / protein copy number per cell: data available for COL
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: data available for COL

⊟Protein stability[edit | edit source]

half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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