From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS05310 [old locus tag: SA0937 ]
  • pan locus tag?: SAUPAN003306000
  • symbol: SA_RS05310
  • pan gene symbol?: cydA
  • synonym:
  • product: cytochrome ubiquinol oxidase subunit I

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS05310 [old locus tag: SA0937 ]
  • symbol: SA_RS05310
  • product: cytochrome ubiquinol oxidase subunit I
  • replicon: chromosome
  • strand: +
  • coordinates: 1063314..1064675
  • length: 1362
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1063314..1064675) NCBI
  • BioCyc: SA_RS05310 BioCyc
  • MicrobesOnline: see SA0937

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGGATACAGTTGAAATCAGTCGGTTTTTGACAGCTATGACTTTAGCAGTTCATATCATT
    TTTGCAACGATTGGTGTTGGTATGCCTTTAATGTTCGCAATTGCAGAATTTTTAGGTATT
    CGCAAAAATGATCTTCAATATATAGCTATGGCCAAAAGATGGGCTAAAGCTTATACAATT
    ACTGTAGCAGTGGGAGTTGTTACAGGTACAATTATAGGACTTCAATTATCATTGATTTGG
    CCTACATTTATGGAAATGGGTGGACACGTTATTGCACTTCCATTATTTATGGAAACATTT
    GCGTTCTTCTTTGAAGCTATTTTCTTAAGTATATATTTATATACTTGGGATCGTTTTAAA
    AATAAATGGACACATTTCTTAATTAGTATACCAGTAATTATTGGTGGCTCTTTCTCAGCC
    TTCTTCATTACTTCAGTGAATTCATTTATGAATACGCCTGCAGGTTTTGAGTTGAAGAAT
    GGAAAGATGGTCAATGTTCAACCTATAGAAGCGATGTTTAACCCATCGTTTATAGTTCGA
    TCATTTCACGTAATTACTACAGCCGGTATGACGATGGCATTTGTTATTGCATCAATAGCA
    GCTTTTAAATTATTGCGTAATCGTCAACCTAAAGATACTGTCTACCATAAGAAAGCTTTG
    AAAATGTCTATGATTGTTGGATTCTTTTCAACTTTACTTTCTATGTTGGCAGGGGATTTA
    TCTGCAAAATTTTTGCATAAATTCCAACCTGAAAAATTAGCAGCTTATGAATGGCATTTC
    GATACATCTTCCCATGCTAAATTATTATTATTTGGTGTGTTAGATGAAAAGACTCAGCAA
    GTTAAAGGTGCGATTGAATTACCTGGACTATTGAGTTTCTTAGCAGATAATAGTGTCAAA
    ACTAAAGTGCAAGGGTTAAATGATTTTCCAAAAAGTTTACATCCGCCTATGATTGTCCAT
    TATTTCTTTGATTTAATGGTAACGATGGGAATTTTATGTTTTGTCATTTCAGGTGTTTAT
    GTTTTAACTTTAATGTTTAAAAAGCTTAGAAAGTTTTCTACTCATAAATGGATGCTTTAC
    GGAATATTATTAACAGGACCAGCTTCAATGCTAGCTATAGAATTTGGATGGTTCTTAACA
    GAGATGGGTAGACAGCCTTGGATTGTTCGTGGTTATATGCGCGTGGCAGAAGCAGCAACA
    CAAGCAGGCGGAATAACCTTCGTTACAATTTTATTTGGCATATTGTACATCATTTTAATG
    TATACATGTGCATACGTATTAATTCGTATGTTTAAAAATAAACCGGCGTATGAAGATGTA
    AATCGTTTAGCCAAGAAGCAAGGAGGAGAAATAGAAAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1362

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS05310 [old locus tag: SA0937 ]
  • symbol: SA_RS05310
  • description: cytochrome ubiquinol oxidase subunit I
  • length: 453
  • theoretical pI: 10.1022
  • theoretical MW: 51145.7
  • GRAVY: 0.514349

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA0937
  • PFAM:
    no clan defined Cyt_bd_oxida_I; Cytochrome bd terminal oxidase subunit I (PF01654; HMM-score: 429.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.057284
    • TAT(Tat/SPI): 0.012533
    • LIPO(Sec/SPII): 0.004423
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTITVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFKNKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVRSFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDLSAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVKTKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLYGILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILMYTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS05310&oldid=79003"