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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS05515 [old locus tag: SA0974 ]
  • pan locus tag?: SAUPAN003353000
  • symbol: SA_RS05515
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS05515 [old locus tag: SA0974 ]
  • symbol: SA_RS05515
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1102428..1103567
  • length: 1140
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1102428..1103567) NCBI
  • BioCyc: SA_RS05515 BioCyc
  • MicrobesOnline: see SA0974

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAAAAGCGTTGGCTTAATCACAGAATATAATCCCTTTCATAATGGGCATCAATATCAT
    ATTAATCAATCTAAAAAACTTACAAATGCTGACGTTACTATTGCAATAATGAGTGGTAAC
    TTTGTCATGCGTGGCGAACCAGCAATCTATAATAAGTTTACTCGTGCAAAAATGGCATTA
    TCAACAGCTGATTTAGTTATCGAACTACCAGCAACTGCCAGTTTATCATCTGGCGATCAT
    TTTGCCGAACTAGCAGTTAAAGTCGCAGATTATATGAGTGTCGATACAATTGCATTTGGT
    AGTGAAAATAATGATATCAAAACATTAAAGCAATTAGCACACAGCATTAATGAAATTGAA
    CAATCTGAATCCTTTTCACAAAAAGTAAAAGAAGGTAAAAGCTACCCTCGTATCATTAGC
    GAATTATTAGAGCATCATGAAGCACTAGCAAGTCCTAACAACATACTTGGTATTAGTTAC
    CTGAAAGCAATTGCTAAAAATGCTAAAAACATCAATGCAATTTCTATCAAACGAGAAAAT
    GCTCAACATCATGATTCATTAATTCAACACCATCAGTTTGCAAGTGGTACATCTATTAGA
    ACATCAATCATTAGTCAAGATGATCATTGGCATCATGTGGTACCTAAAGATATTCAACAC
    TTGTACGTAACACCTCATATAACATTAAATCAAATATTTCCATATTTGAAATATCAAATC
    ATAGCTATGACTACAGATTCATTAAAAAATATTTATACTGTTACTGAAGGTTTTGAAAAT
    CGTTTGAAATCTAACATTTATGAAGCAACTGATTTTCATCATTTTGTAAAATTACTAAAA
    ACAAAGCGTTATACATATACGCATATCCAAAGACTGTTAATGAATGTATTATTAAACATT
    AAACCTACAGATGTTACGAGTAACATTCACGCAGTTAAAGTATTAGCGATGAACGACCGT
    GGCAGACAATATTTAAAGCATTTAAAAACAGCGTTCCCAGAAAGACAATATATAACCAAT
    ATTAACAAAAGCAATGCACATTACTTCACAAATGAAATCAAAGCAACACACATATACAAT
    GCAATAAGCGGGCAACAACAAACAGATTTCAACACGCCTGTCATACAGCAATATCGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS05515 [old locus tag: SA0974 ]
  • symbol: SA_RS05515
  • description: hypothetical protein
  • length: 379
  • theoretical pI: 9.60936
  • theoretical MW: 43239.9
  • GRAVY: -0.393404

⊟Function[edit | edit source]

  • TIGRFAM:
    cytidyltransferase-like domain (TIGR00125; HMM-score: 26)
    and 1 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridine nucleotides nicotinamide-nucleotide adenylyltransferase (TIGR01527; EC 2.7.7.1; HMM-score: 17.7)
  • TheSEED: see SA0974
  • PFAM:
    HUP (CL0039) HIGH_NTase1; HIGH Nucleotidyl Transferase (PF05636; HMM-score: 409.3)
    and 3 more
    CTP_transf_like; Cytidylyltransferase-like (PF01467; HMM-score: 23.6)
    no clan defined LsmAD; LsmAD domain (PF06741; HMM-score: 17.1)
    GH57_38_middle (CL0599) Alpha-mann_mid; Alpha mannosidase middle domain (PF09261; HMM-score: 9.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9939
    • Cytoplasmic Membrane Score: 0.001
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.0044
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007469
    • TAT(Tat/SPI): 0.0002
    • LIPO(Sec/SPII): 0.000333
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKSVGLITEYNPFHNGHQYHINQSKKLTNADVTIAIMSGNFVMRGEPAIYNKFTRAKMALSTADLVIELPATASLSSGDHFAELAVKVADYMSVDTIAFGSENNDIKTLKQLAHSINEIEQSESFSQKVKEGKSYPRIISELLEHHEALASPNNILGISYLKAIAKNAKNINAISIKRENAQHHDSLIQHHQFASGTSIRTSIISQDDHWHHVVPKDIQHLYVTPHITLNQIFPYLKYQIIAMTTDSLKNIYTVTEGFENRLKSNIYEATDFHHFVKLLKTKRYTYTHIQRLLMNVLLNIKPTDVTSNIHAVKVLAMNDRGRQYLKHLKTAFPERQYITNINKSNAHYFTNEIKATHIYNAISGQQQTDFNTPVIQQYR

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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