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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS06670 [old locus tag: SA1173 ]
  • pan locus tag?: SAUPAN003712000
  • symbol: SA_RS06670
  • pan gene symbol?: —
  • synonym:
  • product: secretion protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS06670 [old locus tag: SA1173 ]
  • symbol: SA_RS06670
  • product: secretion protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1335888..1336751
  • length: 864
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1335888..1336751) NCBI
  • BioCyc: SA_RS06670 BioCyc
  • MicrobesOnline: see SA1173

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
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    721
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    841
    TTGGATACACCGAAGAAACAACAATTTGCCTTTAATAATATACAAATGAACATGTCGAAA
    TCAGATGTTGAGAAAACATTAAATAAACCAAAAAGAGTGACATTTAATGAATATGGTACG
    AAGTGGTATACGTATTATGATGACGATTACAATAATTTTATAATGATAAGTTACATGAAA
    GATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATCAAAAATTAAA
    TACAATACACCTAAATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTT
    AAAGGTAGAGTGCGTTACGAACAAAATAATAAAGAATATGATGTTTTCCATAAAAATCAC
    ATTTATACGACGGTATTTTATGATAAGCATCGACGTAATAATGTAACAGCTGTTTTACAA
    GTAAGTGATGCTATGGAAAATAGATTAAAAGAACAATATGGAGCACCTTCGAAATCGCTT
    GCAGATAGTTTTGAACTACAAAATTTTGATTTAGTTAATGCTGAAAGAAAACAACATCAA
    TTATCTACATTGAAGTATTCTAAACAGAATTCTGAAACTGCTCGTAAGCATAGTAAAGAT
    ATGGCCAAAAATCATTATTTTGATCATACAAATTTAAAAGGTCAATCACCATTTGATCGA
    TTGAAAAAAGATGGTATTACATTTAACTCAGCCGGAGAGAATTTAGCATATGGTCAAGTT
    AGTAGTATCTATGCACATCAAGGATTAATGAATTCTATTGGTCACAGAAAAAATATTTTA
    AATGATACGTTTAAAATATTAGGTGTTGGTGTTGATTTTAATGATGAAAAACAACCTTTT
    TGGACAGAAAATTATACTGGTTAA
    60
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⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS06670 [old locus tag: SA1173 ]
  • symbol: SA_RS06670
  • description: secretion protein
  • length: 287
  • theoretical pI: 9.81372
  • theoretical MW: 33604.4
  • GRAVY: -0.990592

⊟Function[edit | edit source]

  • TIGRFAM:
    uncharacterized protein, YkwD family (TIGR02909; HMM-score: 111.6)
  • TheSEED: see SA1173
  • PFAM:
    no clan defined CAP_assoc_N; CAP-associated N-terminal (PF14504; HMM-score: 121.3)
    and 2 more
    CAP (CL0659) CAP; Cysteine-rich secretory protein family (PF00188; HMM-score: 56.2)
    PepSY (CL0320) SmpA_OmlA; SmpA / OmlA family (PF04355; HMM-score: 11.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.067607
    • TAT(Tat/SPI): 0.001575
    • LIPO(Sec/SPII): 0.004808
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MDTPKKQQFAFNNIQMNMSKSDVEKTLNKPKRVTFNEYGTKWYTYYDDDYNNFIMISYMKDKVNALYTNQNIITSKSKIKYNTPKSVVRQRLGEPETEIVKGRVRYEQNNKEYDVFHKNHIYTTVFYDKHRRNNVTAVLQVSDAMENRLKEQYGAPSKSLADSFELQNFDLVNAERKQHQLSTLKYSKQNSETARKHSKDMAKNHYFDHTNLKGQSPFDRLKKDGITFNSAGENLAYGQVSSIYAHQGLMNSIGHRKNILNDTFKILGVGVDFNDEKQPFWTENYTG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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