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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS06725 [old locus tag: SA1183 ]
  • pan locus tag?: SAUPAN003728000
  • symbol: SA_RS06725
  • pan gene symbol?: opuD1
  • synonym:
  • product: glycine/betaine ABC transporter

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS06725 [old locus tag: SA1183 ]
  • symbol: SA_RS06725
  • product: glycine/betaine ABC transporter
  • replicon: chromosome
  • strand: +
  • coordinates: 1346696..1348342
  • length: 1647
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1346696..1348342) NCBI
  • BioCyc: SA_RS06725 BioCyc
  • MicrobesOnline: see SA1183

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTAT
    AGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAACAATTCAAC
    TATGTTACCAATAATATTAAAATGTGGATTACAGAAAAGTTAGGTTGGTATTATCTTATT
    CTTACTACGATTATCGTGTTCTTCTGTATATTCCTTATTTTTAGTCCTATTGGAAAACTT
    AAACTAGGTAAACCAAATGACAAACCTGAGTTTAATACAATTTCATGGTTTGCTATGTTG
    TTTAGTGCTGGTATGGGGATAGGTTTGGTGTTTTATGGTGCAGCTGAACCGATGGCGCAC
    TTTGCTACGCCACCTACAGCAGATCCCAAAACTACTGAAGCTTATACTGAAGCTCTACGT
    TCAACATTTTTCCATTGGGGATTCCATGCTTGGGCTGTTTATGGTGTTGTTGCGTTAGCG
    TTGGCATATTCGCAATTCCGTAAAGGTGAACCAGGTTTATTATCTAGAACTTTACGTCCT
    CTTTTAGGTGATAAAGTAGAAGGTCCTATTGGGATTTTTATTGACGTTTTATCTGTATTT
    GCGACAATCGTTGGGGTAGCCGTTTCGTTAGGTATGGGTGCTCTACAAATTAATGGTGGT
    TTACATTACTTGTTCAATGTTCCAAACAATACGTTTGTACAAGCGATTATCATCATTGTT
    GTTACTATCTTATTTATAGCAAGTGCATGGTCTGGATTAAGTAAAGGTATTCAATACTTA
    AGTAACTTGAACATTGGTTTAGGTACTATTTTAATGGTAGCTGCTTTAATTGTTGGACCA
    ACTGTTCTTATTTTAAATATGTTAACTAGCTCTACGGGTAGTTTACTAAACACATTCTTG
    TTTAATAGTTTTGATACAGCTGCTTTAAATCCTCAAAAACGTGAATGGATGTCTTCATGG
    ACACTTTATTACTGGGGTTGGTGGTTAAGTTGGAGCCCATTCGTTGGAGTGTTTATTGCA
    CGAGTTTCAAAAGGACGTTCAATTAGAGAGTTCATTTCTGGTGTCTTGCTAGTTCCAGCA
    ATTGTTAGTTTTGTTTGGTTTAGTGTCTTTGGTGTATTAGGCATCGAGACAGGTAAGAAA
    CACAAAGAAATTTTTGATATGACTCCTGAAACACAGCTATTTGGAGTGTTTAATCATGTG
    CCATTTGGCATAGTTTTATCGTTGATTGCATTATTATTAATTGCATCATTCTTTATTACA
    TCTGCTGACTCAGCAACATTTGTATTAGGAATGCAAACAACATTTGGTTCATTAAATCCA
    TCTAGTATGGTAAAAGTTGTTTGGGGAATTTCACAGGCCTTAATAGCATTTGTACTTTTA
    TTAGCTGGTGGCGGTAATGGCGCTGAAGCTTTAAATGCGATTCAAAGTGCTGCAATTATA
    AGTGCATTCCCATTCTCCTTTGTCGTCATACTCATGATGGTAAGTTTCTACAAGGATGCG
    AACCAGGAACGTAAATTCCTAGGTTTAACATTGACTCCGAATAAACATCGCTTACAAGAA
    TATATCAAGAGTCAACAAGAAGATTATGAATCTGACATTCTTGAAAAGCGTCAGTCACGT
    AGAAATATAGAGAAAAAAGATAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1647


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS06725 [old locus tag: SA1183 ]
  • symbol: SA_RS06725
  • description: glycine/betaine ABC transporter
  • length: 548
  • theoretical pI: 9.4764
  • theoretical MW: 60471.4
  • GRAVY: 0.520255

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Other transporter, betaine/carnitine/choline transporter (BCCT) family (TIGR00842; HMM-score: 514)
  • TheSEED: see SA1183
  • PFAM:
    APC (CL0062) BCCT; BCCT, betaine/carnitine/choline family transporter (PF02028; HMM-score: 627.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9999
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0001
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008189
    • TAT(Tat/SPI): 0.000364
    • LIPO(Sec/SPII): 0.042358
  • predicted transmembrane helices (TMHMM): 11

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNSSSPENPNGKKYSPVFIYSAIVVAIVVLLGAFLPEQFNYVTNNIKMWITEKLGWYYLILTTIIVFFCIFLIFSPIGKLKLGKPNDKPEFNTISWFAMLFSAGMGIGLVFYGAAEPMAHFATPPTADPKTTEAYTEALRSTFFHWGFHAWAVYGVVALALAYSQFRKGEPGLLSRTLRPLLGDKVEGPIGIFIDVLSVFATIVGVAVSLGMGALQINGGLHYLFNVPNNTFVQAIIIIVVTILFIASAWSGLSKGIQYLSNLNIGLGTILMVAALIVGPTVLILNMLTSSTGSLLNTFLFNSFDTAALNPQKREWMSSWTLYYWGWWLSWSPFVGVFIARVSKGRSIREFISGVLLVPAIVSFVWFSVFGVLGIETGKKHKEIFDMTPETQLFGVFNHVPFGIVLSLIALLLIASFFITSADSATFVLGMQTTFGSLNPSSMVKVVWGISQALIAFVLLLAGGGNGAEALNAIQSAAIISAFPFSFVVILMMVSFYKDANQERKFLGLTLTPNKHRLQEYIKSQQEDYESDILEKRQSRRNIEKKDN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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