PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA_RS08340 [old locus tag: SA1482 ]
• pan locus tag^?: SAUPAN004269000
• symbol: SA_RS08340
• pan gene symbol^?: tnpC2
• synonym:
• product: transposase

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS08340 [old locus tag: SA1482 ]
• symbol: SA_RS08340
• product: transposase
• replicon: chromosome
• strand: -
• coordinates: 1687654..1688031
• length: 378
• essential: no DEG

⊟Accession numbers

• Location: NC_002745 (1687654..1688031) NCBI
• BioCyc: SA_RS08340 BioCyc
• MicrobesOnline: see SA1482

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
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  ATGGATAAACAAGTTAGAAATACAACAGAAATTGTACGTTTGGCGAAGCAGAAATCAAAA
  AAGACAAGGGAAAAAGTAGACAAAGCGATTTCTAAATTTTCGATTGAAGGTAAAGTTATT
  AATTTTAATTCAATAGCAAAGGAAGCTAATGTTTCTAAATCATGGCTTTATAAGGAACAC
  GATATTAGGCAAAGAATCGAATCCCTTCGTGAGCGTCAAATAACAGCAAATGTAGTCTCA
  AAACCCAAGAAAAGTTCTCGTTCGGAGGAAATCCTTATTAAAACCTTAAAAAGAAGAGTA
  ATGGAATTAGAAAAAGAAAATAAAAAATTACAGAACCAAATTCAAAAATTATATGGAGAT
  CTGTATAATAAAGAATAA
  60
  120
  180
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  360
  378
  

⊟Protein

⊟General

• locus tag: SA_RS08340 [old locus tag: SA1482 ]
• symbol: SA_RS08340
• description: transposase
• length: 125
• theoretical pI: 10.822
• theoretical MW: 14804.1
• GRAVY: -1.0384

⊟Function

• TIGRFAM:
  DNA 3'-phosphatase (TIGR01664; EC 3.1.3.32; HMM-score: 11.3)
• TheSEED: see SA1482
• PFAM:
  CoA-acyltrans (CL0149) Transferase; Transferase family (PF02458; HMM-score: 18.4)
  no clan defined HALZ; Homeobox associated leucine zipper (PF02183; HMM-score: 17.9)
  bZIP (CL0018) bZIP_2; Basic region leucine zipper (PF07716; HMM-score: 15.9)
  HTH (CL0123) LacI; Bacterial regulatory proteins, lacI family (PF00356; HMM-score: 15.8)
  and 8 more
  Mga; Mga helix-turn-helix domain (PF05043; HMM-score: 14.7)
  no clan defined SidE; Dot/Icm substrate protein (PF12252; HMM-score: 10.7)
  SlyX; SlyX (PF04102; HMM-score: 9.8)
  TPR_MLP1_2; TPR/MLP1/MLP2-like protein (PF07926; HMM-score: 7.5)
  P-loop_NTPase (CL0023) AAA_11; AAA domain (PF13086; HMM-score: 7.4)
  no clan defined Herpes_BLRF2; Herpesvirus BLRF2 protein (PF05812; HMM-score: 7.1)
  FtsL (CL0225) DivIC; Septum formation initiator (PF04977; HMM-score: 6.6)
  no clan defined DUF4337; Domain of unknown function (DUF4337) (PF14235; HMM-score: 6.4)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.007501
  • TAT(Tat/SPI): 0.000595
  • LIPO(Sec/SPII): 0.001342
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446283204 NCBI
• RefSeq: WP_000361059 NCBI
• UniProt: see SA1482

⊟Protein sequence

• MDKQVRNTTEIVRLAKQKSKKTREKVDKAISKFSIEGKVINFNSIAKEANVSKSWLYKEHDIRQRIESLRERQITANVVSKPKKSSRSEEILIKTLKRRVMELEKENKKLQNQIQKLYGDLYNKE

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications