From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS08695 [old locus tag: SA1543 ]
  • pan locus tag?: SAUPAN004376000
  • symbol: SA_RS08695
  • pan gene symbol?: —
  • synonym:
  • product: peroxiredoxin

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS08695 [old locus tag: SA1543 ]
  • symbol: SA_RS08695
  • product: peroxiredoxin
  • replicon: chromosome
  • strand: +
  • coordinates: 1764081..1764527
  • length: 447
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1764081..1764527) NCBI
  • BioCyc: SA_RS08695 BioCyc
  • MicrobesOnline: see SA1543

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    TTGCATCAACATGACTTTAAAGTCCAAACTTCTTGGCAAGGTGGTCGTAACAATGTCGGA
    AACGTTCAAGGCGACATACTTTCAGAGAATATTTCAATACCTGCTTCTTTAGGTGGTGTT
    GGTATAGGAACAAATCCCGATGAAATGTTAGTATCAGCCGCTTCATCATGTTATATCATC
    TCATTAGCAGCTACTCTTGAACGTGCAAAGTTCACAGATATTTCAATTGAACAACAATCG
    ATTGGAACAGCTTGTTTAAATAATGGAAAATTCAGTATGTCAAAAATTGTGCACCATCCT
    CACATTGAAATTCCAAGTGATCAAATAGCACAATTAGAAAAGCGATTACCAAAATTGATA
    ACAATTGCAGATAATAATTGCATGATTTCAAATGCTGTAAGAAATAATGTAGACATAAAA
    ATCTATCCCATCATTCAGGCCAAATAA
    60
    120
    180
    240
    300
    360
    420
    447

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS08695 [old locus tag: SA1543 ]
  • symbol: SA_RS08695
  • description: peroxiredoxin
  • length: 148
  • theoretical pI: 7.04044
  • theoretical MW: 16080.3
  • GRAVY: -0.105405

⊟Function[edit | edit source]

  • TIGRFAM:
    peroxiredoxin, SACOL1771 subfamily (TIGR03563; HMM-score: 202.7)
    and 2 more
    Cellular processes Cellular processes Detoxification peroxiredoxin, Ohr subfamily (TIGR03561; HMM-score: 47.4)
    Cellular processes Cellular processes Detoxification peroxiredoxin, OsmC subfamily (TIGR03562; HMM-score: 36.7)
  • TheSEED: see SA1543
  • PFAM:
    no clan defined OsmC; OsmC-like protein (PF02566; HMM-score: 72.3)
    and 1 more
    MadL; Malonate transporter MadL subunit (PF03817; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.052031
    • TAT(Tat/SPI): 0.004726
    • LIPO(Sec/SPII): 0.003716
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MHQHDFKVQTSWQGGRNNVGNVQGDILSENISIPASLGGVGIGTNPDEMLVSAASSCYIISLAATLERAKFTDISIEQQSIGTACLNNGKFSMSKIVHHPHIEIPSDQIAQLEKRLPKLITIADNNCMISNAVRNNVDIKIYPIIQAK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS08695&oldid=86592"