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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS08750 [old locus tag: SA1552 ]
  • pan locus tag?: SAUPAN004393000
  • symbol: SA_RS08750
  • pan gene symbol?: isdH
  • synonym:
  • product: iron-regulated surface determinant protein H

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS08750 [old locus tag: SA1552 ]
  • symbol: SA_RS08750
  • product: iron-regulated surface determinant protein H
  • replicon: chromosome
  • strand: -
  • coordinates: 1775280..1777955
  • length: 2676
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1775280..1777955) NCBI
  • BioCyc: SA_RS08750 BioCyc
  • MicrobesOnline: see SA1552

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    ATGAACAAACATCACCCAAAATTAAGGTCTTTCTATTCTATTAGAAAATCAACTCTAGGC
    GTTGCATCGGTCATTGTCAGTACACTATTTTTAATTACTTCTCAACATCAAGCGCAAGCA
    GCAGAAAATACAAATACTTCAGATAAAATCTCGGAAAATCAAAATAATAATGCAACTACA
    ACTCAGCAACCTAAGGATACAAATCAAACACAACCTGCTACGCAACCAGTAATCACTGCG
    AAAAACTATCCTGCAGCGGATGAATCACTTAAAGATGCAATTAAAGATCCTGCATTAGAA
    AATAAAGAACATGATATAGGTCCAAGAGAACAAGTCAATTTCCAGTTATTAGATAAAAAC
    AATGAAACGCAGTACTATCACTTTTTCAGCATCAAAGATCCAGCAGATGTGTATTACACT
    AAAAAGAAAGCAGAAGTTGAATTAGACATCAATACTGCTTCAACATGGAAAAAGTTTGAA
    GTCTATGAAAACAATCAAAAATTACCAGTGAGACTTGTATCATATAGTCCTGTACCAGAA
    GACCATGCCTATATTCGATTCCCAGTTTCAGATGGCACACAAGAATTGAAAATTGTTTCT
    TCGACTCAAATTGATGATGGAGAAGAAACAAATTATGATTATACTAAATTAGTATTTGCT
    AAACCTATTTATAACGATCCTTCACTTGTGAAATCAGATACAAATGATGCAGTAGTAACG
    AATGATCAATCAAGTTCAGACGCAAGTAATCAAACAAACACGAATACATCTAATCAAAAT
    ACATCAACGACCAACAATGCTAATAATCAACCGCAGGCAACGACAAATATGAGTCAACCT
    GCACAACCAAAATCGTCAGCGAATGCAGATCAAGCGTCAAGCCAACCAGCTCATGAAACA
    AATTCTAATGGTAATACTAACGATAAAACGAATGAGTCAAGTAATCAGTCGGATGTTAAT
    CAACAGTATCCACCAGCAGATGAATCACTACAAGATGCAATTAAAAACCCGGCTATCATC
    GATAAAGAACATACAGCTGATAATTGGCGACCAATTGATTTTCAAATGAAAAATGATAAA
    GGTGAAAGACAGTTCTATCATTATGCTAGTACTGTTGAACCAGCAACTGTCATTTTTACA
    AAAACAGGTCCAGTAATTGAGTTAGGTTTAAAGACAGCTTCAACATGGAAGAAATTTGAA
    GTTTATGAAGGTGACAAAAAGTTACCAGTCGAATTAGTATCATATGATTCTGATAAAGAT
    TATGCCTATATTCGTTTCCCAGTATCTAATGGTACGAGAGACGTTAAAAATGTGTCATCT
    ATTGAATATGGTGAGAACATCCATGAAGACTATGATTATACGCTAATGGTCTTTGCACAG
    CCTATTACTAATAACCCAGACGACTATGTGGATGAGGAAACATACAATTTACAAAAATTA
    TTAGCTCCGTATCACAAAGCTAAAACGTTAGAAAGACAAGTTTATGAATTAGAAAAATTA
    CAAGAGAAATTGCCAGAAAAATATAAGGCGGAATATAAAAAGAAATTAGATCAAACTAGA
    GTAGAGTTAGCTGATCAGGTTAAATCAGCAGTGACGGAATTTGAAAATGTTACACCTACA
    AATGATCAATTAACAGATTTACAAGAAGCGCATTTTGTTGTTTTTGAAAGTGAAGAAAAT
    AGTGAGTCAGTTATGGACGGCTTTGTTGAACATCCATTCTATACAGCAACTTTAAATGGT
    CAAAAATATGTAGTGATGAAAACAAAGGATGACAGTTACTGGAAAGATTTAATTGTAGAA
    GGTAAACGTGTCACTACTGTTTCTAAAGATCCTAAAAATAATTCTAGAACGTTGATTTTC
    CCATATATACCTGACAAAGCAGTTTACAATGCGATTGTTAAAGTCGTTGTGGCAAACATT
    GGTTATGAAGGTCAATATCATGTCAGAATTATAAATCAGGATATCAATACAAAAGATGAT
    GATACATCACAAAATAACACGAGTGAACCGCTAAATGTACAAACAGGACAAGAAGGTAAG
    GTTGCTGATACAGATGTAGCTGAAAATAGCAGCACTGCAACAAATCCTAAAGATGCGTCT
    GATAAAGCAGATGTGATAGAACCAGAGTCTGACGTGGTTAAAGATGCTGATAATAATATT
    GATAAAGATGTGCAACATGATGTTGATCATTTATCCGATATGTCGGATAATAATCACTTC
    GATAAGTATGATTTAAAAGAAATGGATACTCAAATTGCCAAAGATACTGATAGAAATGTG
    GATAATAGCGTTGGTATGTCATCGAATGTCGATACTGATAAAGACTCTAATAAAAATAAA
    GACAAAGTCATACAGCTTGCTCATATTGCCGATAAAAATAATCATACTGGAAAAGCAGCA
    AAGCTTGACGTAGTGAAACAAAATTATAATAATACAGACAAAGTTACTGACAAAAAAACA
    ACTGAACATCTGCCGAGTGATATTCATAAAACTGTAGATAAAACAGTGAAAACAAAAGAA
    AAAGCCGGCACACCATCGAAAGAAAACAAACTTAGTCAATCTAAAATGCTACCAAAAACT
    GGAGAAACAACTTCAAGCCAATCATGGTGGGGCTTATATGCGTTATTAGGTATGTTAGCT
    TTATTCATTCCTAAATTCAGAAAAGAATCTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2676

⊟Protein[edit | edit source]

Protein Data Bank: 4WJG

⊟General[edit | edit source]

  • locus tag: SA_RS08750 [old locus tag: SA1552 ]
  • symbol: SA_RS08750
  • description: iron-regulated surface determinant protein H
  • length: 891
  • theoretical pI: 4.84227
  • theoretical MW: 100467
  • GRAVY: -0.943434

⊟Function[edit | edit source]

  • TIGRFAM:
    haptoglobin-binding heme uptake protein HarA (TIGR03658; HMM-score: 2095.9)
    and 4 more
    heme uptake protein IsdB (TIGR03657; HMM-score: 663.9)
    gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 38)
    heme uptake protein IsdC (TIGR03656; HMM-score: 26)
    Cell structure Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 23.8)
  • TheSEED: see SA1552
  • PFAM:
    no clan defined NEAT; Iron Transport-associated domain (PF05031; HMM-score: 98.4)
    and 3 more
    YSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 26.7)
    DUF2283; Protein of unknown function (DUF2283) (PF10049; HMM-score: 18.2)
    DUF4404; Domain of unknown function (DUF4404) (PF14357; HMM-score: 11.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 10
    • Extracellular Score: 0
    • Internal Helices: 0
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 40 aa
    • SP(Sec/SPI): 0.990792
    • TAT(Tat/SPI): 0.007696
    • LIPO(Sec/SPII): 0.000831
    • Cleavage Site: CS pos: 40-41. AQA-AE. Pr: 0.9895
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKHHPKLRSFYSIRKSTLGVASVIVSTLFLITSQHQAQAAENTNTSDKISENQNNNATTTQQPKDTNQTQPATQPVITAKNYPAADESLKDAIKDPALENKEHDIGPREQVNFQLLDKNNETQYYHFFSIKDPADVYYTKKKAEVELDINTASTWKKFEVYENNQKLPVRLVSYSPVPEDHAYIRFPVSDGTQELKIVSSTQIDDGEETNYDYTKLVFAKPIYNDPSLVKSDTNDAVVTNDQSSSDASNQTNTNTSNQNTSTTNNANNQPQATTNMSQPAQPKSSANADQASSQPAHETNSNGNTNDKTNESSNQSDVNQQYPPADESLQDAIKNPAIIDKEHTADNWRPIDFQMKNDKGERQFYHYASTVEPATVIFTKTGPVIELGLKTASTWKKFEVYEGDKKLPVELVSYDSDKDYAYIRFPVSNGTRDVKNVSSIEYGENIHEDYDYTLMVFAQPITNNPDDYVDEETYNLQKLLAPYHKAKTLERQVYELEKLQEKLPEKYKAEYKKKLDQTRVELADQVKSAVTEFENVTPTNDQLTDLQEAHFVVFESEENSESVMDGFVEHPFYTATLNGQKYVVMKTKDDSYWKDLIVEGKRVTTVSKDPKNNSRTLIFPYIPDKAVYNAIVKVVVANIGYEGQYHVRIINQDINTKDDDTSQNNTSEPLNVQTGQEGKVADTDVAENSSTATNPKDASDKADVIEPESDVVKDADNNIDKDVQHDVDHLSDMSDNNHFDKYDLKEMDTQIAKDTDRNVDNSVGMSSNVDTDKDSNKNKDKVIQLAHIADKNNHTGKAAKLDVVKQNYNNTDKVTDKKTTEHLPSDIHKTVDKTVKTKEKAGTPSKENKLSQSKMLPKTGETTSSQSWWGLYALLGMLALFIPKFRKESK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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