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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS09075 [old locus tag: SA1613 ]
  • pan locus tag?: SAUPAN004509000
  • symbol: SA_RS09075
  • pan gene symbol?: —
  • synonym:
  • product: membrane protein insertion efficiency factor YidD

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS09075 [old locus tag: SA1613 ]
  • symbol: SA_RS09075
  • product: membrane protein insertion efficiency factor YidD
  • replicon: chromosome
  • strand: +
  • coordinates: 1848043..1848300
  • length: 258
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1848043..1848300) NCBI
  • BioCyc: SA_RS09075 BioCyc
  • MicrobesOnline: see SA1613

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGAAAAAGATATTCTTGGCGATGATTCATTTTTATCAACGTTTCATTTCGCCACTCACT
    CCACCAACTTGTCGTTTTTATCCAACATGTTCAGAGTACACTAGAGAAGCGATTCAATAC
    CACGGTGCTTTCAAAGGCCTTTATTTAGGCATCCGTCGTATTTTAAAATGTCATCCGCTT
    CATAAAGGTGGCTTTGACCCTGTTCCGTTAAAAAAAGACAAGTCAGCAAGCAAGCATTCA
    CATAAACATAACCATTAA
    60
    120
    180
    240
    258

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS09075 [old locus tag: SA1613 ]
  • symbol: SA_RS09075
  • description: membrane protein insertion efficiency factor YidD
  • length: 85
  • theoretical pI: 10.5102
  • theoretical MW: 9966.69
  • GRAVY: -0.529412

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved putative membrane protein insertion efficiency factor (TIGR00278; HMM-score: 108.9)
  • TheSEED: see SA1613
  • PFAM:
    no clan defined Haemolytic; Haemolytic domain (PF01809; HMM-score: 107.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.059906
    • TAT(Tat/SPI): 0.002175
    • LIPO(Sec/SPII): 0.027373
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKIFLAMIHFYQRFISPLTPPTCRFYPTCSEYTREAIQYHGAFKGLYLGIRRILKCHPLHKGGFDPVPLKKDKSASKHSHKHNH

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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