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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS09995 [old locus tag: SA1740 ]
  • pan locus tag?: SAUPAN004974000
  • symbol: SA_RS09995
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS09995 [old locus tag: SA1740 ]
  • symbol: SA_RS09995
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1994195..1995037
  • length: 843
  • essential: no DEG other strains

Accession numbers[edit | edit source]

  • Location: NC_002745 (1994195..1995037) NCBI
  • BioCyc: G1G21-2016 BioCyc
  • MicrobesOnline: see SA1740

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAAGAAATTCTTTTTTATTGGGCTTTTAGTGTTTGTTGTCTTTTTTACAGCAGCAACC
    ATTATTTGGTTCAGCTATGATAAAAACAAATATGGTACTAAACAATATGATAAAACATTC
    AAAGACGATGCTTTTGACAATGTATCTATAAATTTGGATAGTACAGAACTTCGTATAAAA
    CGGGGGAATCAATTTAGAGTTAAATATGATGGTGACAATGATATATTAATTAATATAGTA
    GATAAGACGTTGAAGATTAGTGATAAAAGGTCTAAGACAAGAGGATATGCAATTGATATG
    AATCCTTTTCATGAGAATAAGAAAACGTTAACGATTGAAATGCCTGATAAAATGATTAAA
    CGTTTAAATCTATCATCTGGAGCAGGAAGTGTTAGAATCAGTGATGTTGATTTAGAGAAC
    ACAAGTATTCAAAGCATTAACGGTGAAGTAGTTATTAAAAACTCAAATCTTGACGCACTA
    GATTCAAAGACAAATAATAGTTCTACTTATATTAGTAAAAGTAACATTAAAAATAGCAAT
    ATTAAAGTTGTTATTGGTACGCTACAAATCGACAAGAGTCAAATTAAACAATCCATATTT
    TTAAACGATCATGGTGACATTGAATTTAAAAACATGCCATCAAAAGTAGATGCAAAAGCT
    TCTACTAAACAAGGAGATATTCGTTTTAAGTATGATAGTAAACCTGAAGACACTATACTA
    AAGCTAAATCCGGGAACGGGTGATAGCGTAGTTAAAAATAAAACATTTACTAATGGTAAA
    GTTGGGAAAAGCGACAATGTTTTAGAATTTTATACGATTGATGGTAATATCAAAGTTGAA
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    843

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS09995 [old locus tag: SA1740 ]
  • symbol: SA_RS09995
  • description: hypothetical protein
  • length: 280
  • theoretical pI: 9.89277
  • theoretical MW: 31618.7
  • GRAVY: -0.5175

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA1740
  • PFAM:
    Adhesin (CL0204) DUF4097; Putative adhesin (PF13349; HMM-score: 54.5)
    and 2 more
    DUF2807; Putative auto-transporter adhesin, head GIN domain (PF10988; HMM-score: 24.1)
    no clan defined Chorein_N; N-terminal region of Chorein or VPS13 (PF12624; HMM-score: 14.7)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.328195
    • TAT(Tat/SPI): 0.001325
    • LIPO(Sec/SPII): 0.24169
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKKFFFIGLLVFVVFFTAATIIWFSYDKNKYGTKQYDKTFKDDAFDNVSINLDSTELRIKRGNQFRVKYDGDNDILINIVDKTLKISDKRSKTRGYAIDMNPFHENKKTLTIEMPDKMIKRLNLSSGAGSVRISDVDLENTSIQSINGEVVIKNSNLDALDSKTNNSSTYISKSNIKNSNIKVVIGTLQIDKSQIKQSIFLNDHGDIEFKNMPSKVDAKASTKQGDIRFKYDSKPEDTILKLNPGTGDSVVKNKTFTNGKVGKSDNVLEFYTIDGNIKVE

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]