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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS10000 [old locus tag: SA1741 ]
  • pan locus tag?: SAUPAN004993000
  • symbol: SA_RS10000
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS10000 [old locus tag: SA1741 ]
  • symbol: SA_RS10000
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1995034..1995591
  • length: 558
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1995034..1995591) NCBI
  • BioCyc: SA_RS10000 BioCyc
  • MicrobesOnline: see SA1741

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAACAAGATTACTTATTTAAATGAATTAGAAACAGCACTTGATGCGCTACCTAGGCAT
    TTAAGAGATCAAAAAATGTATGAATATGAACGTTATTTTTATGAGCAAGAACTTAATGGC
    GTTGATGAAGGGGAAATTTTAAAGAAGTTAAAAGACCCACAAGATGTTGCAGCTGAAACA
    AAAGCTAGAAGTGTTATTGATTATGCTGAATCTAAACCAACATTTGAAAATATTTCAAGA
    GCTGTTGCTGCTTCATTAAGTTTAGGCATTCTATCTATTTTTGTCATCCTTATACCAGTA
    TCTATAGTTGGATTATTTGTATTAGCATTATTTTTAATATCACTTTTGCTGCTGTTTTGT
    CCAATTATTTTATTAGCATCAGCAATATCCAGAGGAATTGTAGACTCAATTAGTAATGTA
    TTTTTTGCCATATCATATTCAGGATTAGGATTAGTATTTATCATTGTCATATTTAAGATT
    TTAGAATACATTTATCGTTTAATCTTAAAATATTTACTTTGGTATATTAAAACTGTCAAA
    GGAAGCGTTAGAAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    558

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS10000 [old locus tag: SA1741 ]
  • symbol: SA_RS10000
  • description: hypothetical protein
  • length: 185
  • theoretical pI: 8.35312
  • theoretical MW: 21020.8
  • GRAVY: 0.582703

⊟Function[edit | edit source]

  • TIGRFAM:
    two transmembrane protein (TIGR04527; HMM-score: 8.8)
    and 1 more
    HAD ATPase, P-type, family IC (TIGR01494; EC 3.6.3.-; HMM-score: 2.9)
  • TheSEED: see SA1741
  • PFAM:
    Yip1 (CL0112) DUF1700; Protein of unknown function (DUF1700) (PF08006; HMM-score: 167.2)
    and 1 more
    no clan defined DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 10.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002326
    • TAT(Tat/SPI): 0.00017
    • LIPO(Sec/SPII): 0.000369
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKITYLNELETALDALPRHLRDQKMYEYERYFYEQELNGVDEGEILKKLKDPQDVAAETKARSVIDYAESKPTFENISRAVAASLSLGILSIFVILIPVSIVGLFVLALFLISLLLLFCPIILLASAISRGIVDSISNVFFAISYSGLGLVFIIVIFKILEYIYRLILKYLLWYIKTVKGSVRK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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