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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS12235 [old locus tag: SA2129 ]
  • pan locus tag?: SAUPAN005829000
  • symbol: SA_RS12235
  • pan gene symbol?: galM
  • synonym:
  • product: galactose mutarotase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS12235 [old locus tag: SA2129 ]
  • symbol: SA_RS12235
  • product: galactose mutarotase
  • replicon: chromosome
  • strand: -
  • coordinates: 2394302..2395321
  • length: 1020
  • essential: no DEG other strains

Accession numbers[edit | edit source]

  • Location: NC_002745 (2394302..2395321) NCBI
  • BioCyc: SA_RS12235 BioCyc
  • MicrobesOnline: see SA2129

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGATAGTTGAAGTTGAGCACCAAAGACAAGGTGTAGATTTAATCAAAATTGATAATGAT
    GAAACTAAAATTATTTTTACGAATTATGGAGCAAGAGTAGTGTCTTGGAAATATCATGAT
    AATAATATTGTTCTTGGAAATGTTGTTGAAGCGGATGAGTTTTATCATAGTAATCCTTTT
    AAATTTGGTGCTTCTATAGGAAGATATAGCGGTAGAATTGATAATGCTAAATTTAAGTTG
    AAAGGTAAAGAATATCAGTTAGAAAAAAACAACGGTGAACATCATTTACATGGTGGATGT
    CATGGTTTGGACAATAAGTTATTTGATTATGAAATTAGAAATGAAATTGCTCAAATTAAA
    GTTATATTTAAGACGGTGTTGAAATCAGCTGATGATCATTTCCCGGGTGATATCGATGTG
    ACGATTACACATATTTATGATGCGGATCACCAATGGTCGATTGAATACGAAGCAGTTGCA
    TCAGAAGACACATTGTTTAGTCCTATGAATCATGTGTACTTCAATTTGAATCGAGATAAT
    AATGTCGTTGATAATCATCGCATTTCAAGTAATCAATTAGATATGTATGTATTAGATGAG
    CGAAATATTGTTACAGGTGATATTCTAGATTTACATGAAGTGTTTGAAGATAACAAGATA
    AAATTGAGTGATATTTTTACATCACAACATGCGCAATTAAGCCAACAAATGACACGTTTT
    GGTGGTCTCGATCACCCATTTACAGTTGGTGAACATAAAATGTATGTTGAAAATCATGAA
    TTTATGTTAGAGGTCGATACAGATATGCCTCATGTTGTGTTCTTTACTTTTAACCAGCCT
    GATGAGTGGGATAGTCCATTTAATATTTATAAACCACATTCTGGCTTTACATTAGAAACA
    CAATTTTTACCAAATGATATTAATTTATATGGTGAAAAAGCACCGTCAATTTTAAAAGCT
    GGTGAAGTGTTCAATTCGAAAACAAGTTTCCGTATCGAAGAAAAAGTAGAAAATGATTAA
    60
    120
    180
    240
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    360
    420
    480
    540
    600
    660
    720
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    840
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    960
    1020

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS12235 [old locus tag: SA2129 ]
  • symbol: SA_RS12235
  • description: galactose mutarotase
  • length: 339
  • theoretical pI: 4.83314
  • theoretical MW: 39309.4
  • GRAVY: -0.557227

Function[edit | edit source]

  • TIGRFAM:
    galactose mutarotase (TIGR02636; EC 5.1.3.3; HMM-score: 198)
  • TheSEED: see SA2129
  • PFAM:
    Gal_mutarotase (CL0103) Aldose_epim; Aldose 1-epimerase (PF01263; HMM-score: 195.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005433
    • TAT(Tat/SPI): 0.000198
    • LIPO(Sec/SPII): 0.00079
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MIVEVEHQRQGVDLIKIDNDETKIIFTNYGARVVSWKYHDNNIVLGNVVEADEFYHSNPFKFGASIGRYSGRIDNAKFKLKGKEYQLEKNNGEHHLHGGCHGLDNKLFDYEIRNEIAQIKVIFKTVLKSADDHFPGDIDVTITHIYDADHQWSIEYEAVASEDTLFSPMNHVYFNLNRDNNVVDNHRISSNQLDMYVLDERNIVTGDILDLHEVFEDNKIKLSDIFTSQHAQLSQQMTRFGGLDHPFTVGEHKMYVENHEFMLEVDTDMPHVVFFTFNQPDEWDSPFNIYKPHSGFTLETQFLPNDINLYGEKAPSILKAGEVFNSKTSFRIEEKVEND

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]