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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS12485 [old locus tag: SA2175 ]
  • pan locus tag?: SAUPAN005914000
  • symbol: SA_RS12485
  • pan gene symbol?: —
  • synonym:
  • product: Hsp20/alpha crystallin family protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS12485 [old locus tag: SA2175 ]
  • symbol: SA_RS12485
  • product: Hsp20/alpha crystallin family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2443756..2444184
  • length: 429
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2443756..2444184) NCBI
  • BioCyc: SA_RS12485 BioCyc
  • MicrobesOnline: see SA2175

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGATATTGAACTTCAATCAATTCGAGAATCAAAACTTTTTTAACGGTAATCCAAGTGAT
    ACATTTAAAGATTTAGGTAAACAAGTATTTAATTACTTTTCAACACCTTCATTTGTAACG
    AATATATATGAAACAGACGAATTATATTACTTAGAAGCTGAACTAGCAGGTGTAAATAAA
    GAAGATATTAGTATCGATTTCAATAATAATACGCTCACTATTCAAGCTACTAGAAGCGCA
    AAATACAAATCTGAACAACTCATTTTAGATGAGCGTAACTTCGAATCATTAATGCGTCAA
    TTTGATTTTGAAGCTGTTGATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTA
    ACCATTACATTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCA
    ATTTCATAG
    60
    120
    180
    240
    300
    360
    420
    429


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS12485 [old locus tag: SA2175 ]
  • symbol: SA_RS12485
  • description: Hsp20/alpha crystallin family protein
  • length: 142
  • theoretical pI: 4.21588
  • theoretical MW: 16305
  • GRAVY: -0.476056

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA2175
  • PFAM:
    HSP20 (CL0190) HSP20; Hsp20/alpha crystallin family (PF00011; HMM-score: 65.6)
    and 4 more
    ACT (CL0070) ACT_phage; Phage ACT-like domain (PF24021; HMM-score: 17.2)
    HSP20 (CL0190) ArsA_HSP20; HSP20-like domain found in ArsA (PF17886; HMM-score: 16.6)
    CS; CS domain (PF04969; HMM-score: 14.1)
    KH (CL0007) KH_SLS1_1; SLS1 protein first KH domain (PF14611; HMM-score: 13.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.53
    • Cellwall Score: 8.75
    • Extracellular Score: 0.7
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9075
    • Cytoplasmic Membrane Score: 0.0035
    • Cell wall & surface Score: 0.0237
    • Extracellular Score: 0.0653
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005509
    • TAT(Tat/SPI): 0.000199
    • LIPO(Sec/SPII): 0.000493
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MILNFNQFENQNFFNGNPSDTFKDLGKQVFNYFSTPSFVTNIYETDELYYLEAELAGVNKEDISIDFNNNTLTIQATRSAKYKSEQLILDERNFESLMRQFDFEAVDKQHITASFENGLLTITLPKIKPSNETTSSTSIPIS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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