From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS12545 [old locus tag: SA2187 ]
  • pan locus tag?: SAUPAN005931000
  • symbol: SA_RS12545
  • pan gene symbol?: nasE
  • synonym: nirD
  • product: nitrite reductase (NAD(P)H) small subunit

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS12545 [old locus tag: SA2187 ]
  • symbol: SA_RS12545
  • product: nitrite reductase (NAD(P)H) small subunit
  • replicon: chromosome
  • strand: -
  • coordinates: 2457679..2457993
  • length: 315
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2457679..2457993) NCBI
  • BioCyc: SA_RS12545 BioCyc
  • MicrobesOnline: see SA2187

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGGAAACAAAAGAAAAAATTAAAGTGACAACTATAGATGAATTAACACCCCTAATTGGA
    AAAAAGGTTATTGTCAAAGGCAAAGAGGTAGGATTGTTTTTAACTGAAAGTGGTACAATT
    CACGCGATTCACAATATTTGTCCGCATAAACAAGGACCATTGTCAGAGGGAACAGTGAGT
    GGTGAATATGTATTCTGTCCACTTCATGATCAAAAGATTGATTTAAATACTGGGATTGTA
    CAAGAACCTGATGAAGGTTGTGTAGATGTTTATGAGGTAGAAGTTACAGACGGGAACGTA
    TATATATGTCTGTAG
    60
    120
    180
    240
    300
    315

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS12545 [old locus tag: SA2187 ]
  • symbol: SA_RS12545
  • description: nitrite reductase (NAD(P)H) small subunit
  • length: 104
  • theoretical pI: 4.55469
  • theoretical MW: 11410
  • GRAVY: -0.0759615

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Central intermediary metabolism Nitrogen metabolism nitrite reductase [NAD(P)H], small subunit (TIGR02378; EC 1.7.1.4; HMM-score: 81.6)
    and 1 more
    Rieske [2Fe-2S] domain protein, MocE subfamily (TIGR02377; HMM-score: 35)
  • TheSEED: see SA2187
  • PFAM:
    ISP-domain (CL0516) Rieske_2; Rieske-like [2Fe-2S] domain (PF13806; HMM-score: 65.1)
    and 1 more
    Rieske; Rieske [2Fe-2S] domain (PF00355; HMM-score: 42)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012035
    • TAT(Tat/SPI): 0.000458
    • LIPO(Sec/SPII): 0.000859
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • METKEKIKVTTIDELTPLIGKKVIVKGKEVGLFLTESGTIHAIHNICPHKQGPLSEGTVSGEYVFCPLHDQKIDLNTGIVQEPDEGCVDVYEVEVTDGNVYICL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: NreC*, Rex* see SA2187

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS12545&oldid=101355"