From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS12610 [old locus tag: SA2199 ]
  • pan locus tag?: SAUPAN005945000
  • symbol: SA_RS12610
  • pan gene symbol?: fmhA
  • synonym:
  • product: aminoacyltransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS12610 [old locus tag: SA2199 ]
  • symbol: SA_RS12610
  • product: aminoacyltransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 2468026..2469276
  • length: 1251
  • essential: yes DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2468026..2469276) NCBI
  • BioCyc: SA_RS12610 BioCyc
  • MicrobesOnline: see SA2199

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCA
    CATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCAT
    CTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAGCA
    CGCACACTTAAATTTTTCAAATATTTTTATACACATCGCGGGCCAGTGATGGATTATACA
    AATCAATCATTAGTAGCATTTTTCTTTAAAGCATTAACGTCATATTTAAAGAAACACAAT
    TGTTTATATGTCCTTGTAGATCCATATTTAATTGAAAATTTACGCAATGCAGACGGTGAA
    ATTGTTAAATCTTATGATAACCGAGCATTTGTTAGAACAATGGATAAATTAGGTTATAAA
    CACCAAGGTTTCCCTGTAGGTTATGATTCAATGAGCCAAATCCGTTGGCTGTCAGTGTTA
    GATTTAAAAGATAAGACTGAAGACCAACTTTTAAAAGAAATGGATTATCAAACGAGACGT
    AATATTAAAAAAACATATGATATTGGTGTCAAAACTAAAACGTTAACGATTGATGAAACG
    CAAACTTTTTTCGACTTATTCCATATGGCTGAGGAAAAGCACGGTTTCAAATTCCGTGAG
    TTACCATACTTTGAAGAAATGCAAAAGTTATACGATGACCACGCCATGTTAAAGTTGGCG
    TATATTGATTTAAACGAGTATTTAAAAACGTTACAATTAAAGCAACAACAATTAACAGCT
    GAACTCTCAGGTGTTGAAGAAGCATTGGAAGAAAGTCCTAATTCAAAGAAAAATAAAACG
    AAACGCACACAGCTAGAACAACAGCTAAATAGCAATAAGCGTAAAATCGACAATACAATA
    GAACAAATTGAACAAGATGGTGCAGTCTTAAACTTAGCTTCTGCTTTATTTATCTACAAT
    GAGCATGAAGTTTATTACTTATCTAGTGGTTCAAACCCTAAATATAATGCTTATATGGGT
    GCCTACCATTTGCAGTGGGAAATGATTAAGTTTGCTAAAGCGCATCATATTGATCGCTAT
    AATTTTTATGGTATTACCGGTGACTATTCAGAGTCATCAGAAGACTATGGCGTCCAACAA
    TTCAAAAAAGGTTTTAACGCACATGTAGAAGAGTATATCGGTGACTTTATTAAGCCTATC
    AAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1251

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS12610 [old locus tag: SA2199 ]
  • symbol: SA_RS12610
  • description: aminoacyltransferase
  • length: 416
  • theoretical pI: 7.5545
  • theoretical MW: 48940.1
  • GRAVY: -0.61899

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General FemAB-related protein, PEP-CTERM system-associated (TIGR03019; HMM-score: 21.2)
  • TheSEED: see SA2199
  • PFAM:
    Acetyltrans (CL0257) FemAB; FemAB family (PF02388; HMM-score: 496.7)
    and 3 more
    Acetyltransf_6; Acetyltransferase (GNAT) domain (PF13480; HMM-score: 26.5)
    no clan defined Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 13.6)
    DUF2203; Uncharacterized conserved protein (DUF2203) (PF09969; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011597
    • TAT(Tat/SPI): 0.000365
    • LIPO(Sec/SPII): 0.00173
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHRVDLKGDVHLVGVKDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKHNCLYVLVDPYLIENLRNADGEIVKSYDNRAFVRTMDKLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALEESPNSKKNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDYSESSEDYGVQQFKKGFNAHVEEYIGDFIKPIKPLLYKVQTYLNHKRR

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS12610&oldid=75056"