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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS12920 [old locus tag: SA2249 ]
  • pan locus tag?: SAUPAN006020000
  • symbol: SA_RS12920
  • pan gene symbol?: lnsB
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS12920 [old locus tag: SA2249 ]
  • symbol: SA_RS12920
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2525771..2526520
  • length: 750
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2525771..2526520) NCBI
  • BioCyc: SA_RS12920 BioCyc
  • MicrobesOnline: see SA2249

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGTCAAATACAAATAAACATTACATAGAAGAAGAATACGCTACTGAACAATCGCGTTTT
    TTCAAACGTGATATTGGATTTATTTTCCTTTATATATTTTTGGTTAACATCTTGCCAATC
    ATTATCGTCTTTTTAACTTTTGGGTTAGTAGCTGTATTCACTCAACAAGCCCCATGGGGT
    TTCTCTTTTCCTATTTCAATGAACATTAGCTATTTACTCGCAGTTATTATTTCACTAGCT
    ATTTTTCGTCGGATGCATGAAGATGCATTTGTTCCGATGATACGTACGCAAATCATTGCC
    AGCACCAAATATAAATGGCATATTCTTATATCATTTACACTAAGTGTCGTACTCTTTTTA
    CTTTTAAATTATTTCGATATTTTCGCACTAAATGTAGATGCCTTTACTGTCTTTGACATT
    TACCCGCTCATTAGAGATTATGATTCCATCAGTTTAATAGTAATGTTGTGGTTAACCATT
    ATATTAAATACTTTGATTTGCCAACTTATTTTCCGTCATATTTTAATTCAAGAATTAAGC
    AGATTAATACCTTTAAAGATTACAATAGTATTATCCGTTATCCTTGAAACACTGTACTAT
    TATCCATACATTAATACATGGTGGGAATTCATTCCAGCATTGATACTAGCTAGTAGTGCG
    ACTTACTTATATTTAAAGTCAAACCGTAATTTTATGGTGAGCTATTTCTATCAATTAGCA
    GTTATACTCGTTTTGCATATTTTCATGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    750

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS12920 [old locus tag: SA2249 ]
  • symbol: SA_RS12920
  • description: hypothetical protein
  • length: 249
  • theoretical pI: 7.68696
  • theoretical MW: 29431
  • GRAVY: 0.899598

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA2249
  • PFAM:
    Peptidase_U (CL0472) Abi; CAAX protease self-immunity (PF02517; HMM-score: 17.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003003
    • TAT(Tat/SPI): 0.000257
    • LIPO(Sec/SPII): 0.001171
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSNTNKHYIEEEYATEQSRFFKRDIGFIFLYIFLVNILPIIIVFLTFGLVAVFTQQAPWGFSFPISMNISYLLAVIISLAIFRRMHEDAFVPMIRTQIIASTKYKWHILISFTLSVVLFLLLNYFDIFALNVDAFTVFDIYPLIRDYDSISLIVMLWLTIILNTLICQLIFRHILIQELSRLIPLKITIVLSVILETLYYYPYINTWWEFIPALILASSATYLYLKSNRNFMVSYFYQLAVILVLHIFM

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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