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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS13060 [old locus tag: SA2275 ]
  • pan locus tag?: SAUPAN006073000
  • symbol: SA_RS13060
  • pan gene symbol?: —
  • synonym:
  • product: tandem-type lipoprotein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS13060 [old locus tag: SA2275 ]
  • symbol: SA_RS13060
  • product: tandem-type lipoprotein
  • replicon: chromosome
  • strand: -
  • coordinates: 2550528..2551304
  • length: 777
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2550528..2551304) NCBI
  • BioCyc: SA_RS13060 BioCyc
  • MicrobesOnline: see SA2275

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGATGATTCATTCAAGAAAGTTGAGGCTTTGGCTGTATTTAGTATTATTAGCTGTTTTT
    ATAGGCGCTTGCGGAATGAAAAAGGAAGAAAGCAGTAAGGATAAACAAATTAAAGAAAAC
    TTCAACAAAACGTTGAGCTTATATCCAACTAAAAATCTTGAAGACTTTTATGATAAAGAA
    GGTTTTCGAGATGAAGAGTTTGAAAAAGGAGATAAAGGGACTTGGATAATTCACTCTAAA
    ATGACAATAGAAACAAATGGAAAGAATATGGAATCCAGAGGCTTGGTCCTGTATGTAGAC
    CGCAATACCAGAACGACAAAAGGTGAATTTATTGTGAGGGAATTATGGGAAGATAAAAAA
    GGATACTCACGTAGTAAAGAAAAAGAATATCCAGTGAAAATGGAACATAATAAAATTATC
    CCAACTAAACCGATAGCTGATGATAAATTAAGAAAAGAAATTGAAGACTTTAAGTTTTTT
    GTACAATACGGTGACTTTAAAGATATTAATGATTATAAAGATGGTGACATTTCATATAAT
    CCTAATGTTCCAAGTTATTCCGCAAAATATCAATTGAGTAACAATGACTACAATGTGAAG
    CAACTTAGAAAGAGGTATGATATACCAACTAAGAAAGCTCCGAAACTATTGTTAAAAGGT
    GATGGTGATTTAAAAGGATCATCTATAGGACACAAAAATTTAGAGTTTATATTTATAGAA
    AATAAAGAAGAAAACATCTATTTTACGGATAGTATTAATTTCAAACCTACTGAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    777

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS13060 [old locus tag: SA2275 ]
  • symbol: SA_RS13060
  • description: tandem-type lipoprotein
  • length: 258
  • theoretical pI: 9.33537
  • theoretical MW: 30454.5
  • GRAVY: -0.894961

⊟Function[edit | edit source]

  • TIGRFAM:
    Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 344.5)
  • TheSEED: see SA2275
  • PFAM:
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 436.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 23 aa
    • SP(Sec/SPI): 0.00064
    • TAT(Tat/SPI): 0.000117
    • LIPO(Sec/SPII): 0.998885
    • Cleavage Site: CS pos: 23-24. IGA-CG. Pr: 0.9992
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MMIHSRKLRLWLYLVLLAVFIGACGMKKEESSKDKQIKENFNKTLSLYPTKNLEDFYDKEGFRDEEFEKGDKGTWIIHSKMTIETNGKNMESRGLVLYVDRNTRTTKGEFIVRELWEDKKGYSRSKEKEYPVKMEHNKIIPTKPIADDKLRKEIEDFKFFVQYGDFKDINDYKDGDISYNPNVPSYSAKYQLSNNDYNVKQLRKRYDIPTKKAPKLLLKGDGDLKGSSIGHKNLEFIFIENKEENIYFTDSINFKPTE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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