PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA_RS13660 [old locus tag: SA2386 ]
• pan locus tag^?: SAUPAN006288000
• symbol: SA_RS13660
• pan gene symbol^?: tnpC
• synonym:
• product: transposase

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS13660 [old locus tag: SA2386 ]
• symbol: SA_RS13660
• product: transposase
• replicon: chromosome
• strand: -
• coordinates: 2674325..2674702
• length: 378
• essential: no DEG

⊟Accession numbers

• Location: NC_002745 (2674325..2674702) NCBI
• BioCyc: SA_RS13660 BioCyc
• MicrobesOnline: see SA2386

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  
  ATGGATAAACAAGTTAGAAATACAACAGAAATTGTACGTTTGGCGAAGCAGAAATCAAAA
  AAGACAAGGGAAAAAGTAGACAAAGCGATTTCTAAATTTTCGATTGAAGGTAAAGTTATT
  AATTTTAATTCAATAGCAAAGGAAGCTAATGTTTCTAAATCATGGCTTTATAAGGAACAC
  GATATTAGGCAAAGAATCGAATCCCTTCGTGAGCGTCAAATAACAGCAAATGTAGTCTCA
  AAACCCAAGAAAAGTTCTCGTTCGGAGGAAATCCTTATTAAAACCTTAAAAAGAAGAGTA
  ATGGAATTAGAAAAAGAAAATAAAAAATTACAGAACCAAATTCAAAAATTATATGGAGAT
  CTGTATAATAAAGAATAA
  60
  120
  180
  240
  300
  360
  378
  

⊟Protein

⊟General

• locus tag: SA_RS13660 [old locus tag: SA2386 ]
• symbol: SA_RS13660
• description: transposase
• length: 125
• theoretical pI: 10.822
• theoretical MW: 14804.1
• GRAVY: -1.0384

⊟Function

• TIGRFAM:
  DNA 3'-phosphatase (TIGR01664; EC 3.1.3.32; HMM-score: 11.3)
• TheSEED: see SA2386
• PFAM:
  HTH (CL0123) DUF6262; Family of unknown function (DUF6262) (PF19776; HMM-score: 55.4)
  and 10 more
  CoA-acyltrans (CL0149) Transferase; Transferase family (PF02458; HMM-score: 18.6)
  INO80_complex (CL0850) INO80F; INO80 complex subunit F (PF24245; HMM-score: 18)
  no clan defined HALZ; Homeobox associated leucine zipper (PF02183; HMM-score: 16.8)
  HTH (CL0123) LacI; Bacterial regulatory proteins, lacI family (PF00356; HMM-score: 16.2)
  bZIP (CL0018) bZIP_2; Basic region leucine zipper (PF07716; HMM-score: 15.5)
  TetR_C (CL0174) TetR_C_38; Tetracyclin repressor-like, C-terminal domain (PF19352; HMM-score: 13.1)
  FtsL (CL0225) ZapB; Cell division protein ZapB (PF06005; HMM-score: 12.8)
  P-loop_NTPase (CL0023) AAA_11; AAA domain (PF13086; HMM-score: 8.8)
  no clan defined DUF4337; Domain of unknown function (DUF4337) (PF14235; HMM-score: 8.3)
  FtsL (CL0225) DivIC; Septum formation initiator (PF04977; HMM-score: 7.7)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.9889
  • Cytoplasmic Membrane Score: 0.0072
  • Cell wall & surface Score: 0.0018
  • Extracellular Score: 0.0021
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.007501
  • TAT(Tat/SPI): 0.000595
  • LIPO(Sec/SPII): 0.001342
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446283204 NCBI
• RefSeq: WP_000361059 NCBI
• UniProt: see SA2386

⊟Protein sequence

• MDKQVRNTTEIVRLAKQKSKKTREKVDKAISKFSIEGKVINFNSIAKEANVSKSWLYKEHDIRQRIESLRERQITANVVSKPKKSSRSEEILIKTLKRRVMELEKENKKLQNQIQKLYGDLYNKE

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications