PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002286000
• symbol^?: nupC
• synonym:
• description^?: pyrimidine nucleoside transporter NupC

  descriptions from strain specific annotations:

  • pyrimidine nucleoside transporter NupC
  • pyrimidine nucleoside transport protein
  • nucleoside permease NupC
  • nucleoside permease NupC, putative
  • NupC/NupG family nucleoside CNT transporter
  • CNT family concentrative nucleoside transporter
  • Na+ dependent nucleoside transporter
  • Na+ dependent nucleoside transporter domain-containing protein
  • Na+ dependent nucleoside transporter family protein
• strand^?: -
• coordinates^?: 2807266..2808480
• synteny block^?: BlockID0015850
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0566 (nupC)
N315:
SA0479 (nupC)
NCTC8325:
SAOUHSC_00501
Newman:
NWMN_0483 (nupC)
USA300_FPR3757:
SAUSA300_0506 (nupC)
04-02981:
SA2981_0496 (nupC)
08BA02176:
C248_0593 (nupC)
11819-97:
MS7_0510
6850:
RSAU_000472 (nupC2)
71193:
ST398NM01_0596
ECT-R 2:
ECTR2_474
ED133:
SAOV_0556c
ED98:
SAAV_0482 (nupC)
HO 5096 0412:
SAEMRSA15_04470 (nupC)
JH1:
SaurJH1_0557
JH9:
SaurJH9_0543
JKD6008:
SAA6008_00527 (nupC)
JKD6159:
SAA6159_00474 (nupC)
LGA251:
SARLGA251_04560 (nupC)
M013:
M013TW_0505
MRSA252:
SAR0524 (nupC)
MSHR1132:
SAMSHR1132_04650
MSSA476:
SAS0478
Mu3:
SAHV_0518 (nupC)
Mu50:
SAV0521 (nupC)
MW2:
MW0476 (nupC)
RF122:
SAB0471c (nupC)
ST398:
SAPIG0596
T0131:
SAT0131_00571
TCH60:
HMPREF0772_12670 (nupC2)
TW20:
SATW20_05900 (nupC)
USA300_TCH1516:
USA300HOU_0514 (nupC1)
VC40:
SAVC_02190

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MHILIGIIGIIFFLALAFLFSSDRKNIRWKYVGILLAIQLIFAFILLKTTMGIKVIGGIS
  N315            MHILIGIIGIIFFLALAFLFSSDRKNIRWKYVGILLAIQLIFAFILLKTTMGIKVIGGIS
  NCTC8325        MHILIGIIGIIFFLALAFLFSSDRKNIRWKYVGILLAIQLIFAFILLKTTMGIKVIGGIS
  Newman          MHILIGIIGIIFFLALAFLFSSDRKNIRWKYVGILLAIQLIFAFILLKTTMGIKVIGGIS
  USA300_FPR3757  MHILIGIIGIIFFLALAFLFSSDRKNIRWKYVGILLAIQLIFAFILLKTTMGIKVIGGIS
                  ************************************************************
  
  COL             NGFNYLLLKAADGVNFVFGGIQYIDPKQPPFFFSVLLPIVFISAIIGILQYTKILPLIIN
  N315            NGFNYLLLKAADGVNFVFGGIQYIDPKQPPFFFSVLLPIVFISAIIGILQYTKILPLIIN
  NCTC8325        NGFNYLLLKAADGVNFVFGGIQYIDPKQPPFFFSVLLPIVFISAIIGILQYTKILPLIIN
  Newman          NGFNYLLLKAADGVNFVFGGIQYIDPKQPPFFFSVLLPIVFISAIIGILQYTKILPLIIN
  USA300_FPR3757  NGFNYLLLKAADGVNFVFGGIQYIDPKQPPFFFSVLLPIVFISAIIGILQYTKILPLIIN
                  ************************************************************
  
  COL             VLGFLISKINGMGRLESYNAVAAAILGQSEVFISIKKQLPYIPKQRLYTLTASAMSTVSA
  N315            VLGFLISKINGMGRLESYNAVAAAILGQSEVFISIKKQLPYIPKQRLYTLTASAMSTVSA
  NCTC8325        VLGFLISKINGMGRLESYNAVAAAILGQSEVFISIKKQLPYIPKQRLYTLTASAMSTVSA
  Newman          VLGFLISKINGMGRLESYNAVAAAILGQSEVFISIKKQLPYIPKQRLYTLTASAMSTVSA
  USA300_FPR3757  VLGFLISKINGMGRLESYNAVAAAILGQSEVFISIKKQLPYIPKQRLYTLTASAMSTVSA
                  ************************************************************
  
  COL             SIIGAYFTLIEPKYVVTAVVLNLFGGFIIASIINPYKVNEEDDKLLVEETEERQQSFFEM
  N315            SIIGAYFTLIEPKYVVTAVVLNLFGGFIIASIINPYKVNEEDDKLLVEETEERQQSFFEM
  NCTC8325        SIIGAYFTLIEPKYVVTAVVLNLFGGFIIASIINPYKVNEEDDKLLVEETEERQQSFFEM
  Newman          SIIGAYFTLIEPKYVVTAVVLNLFGGFIIASIINPYKVNEEDDKLLVEETEERQQSFFEM
  USA300_FPR3757  SIIGAYFTLIEPKYVVTAVVLNLFGGFIIASIINPYKVNEEDDKLLVEETEERQQSFFEM
                  ************************************************************
  
  COL             LGEYILDGFKVAVIVGAMLIGYIAIIALLNGIVSNIFSTVSGGAISWDFQTLIGFVFAPF
  N315            LGEYILDGFKVAVIVGAMLIGYIAIIALLNGIVSNIFSTVSGGAISWDFQTLIGFVFAPF
  NCTC8325        LGEYILDGFKVAVIVGAMLIGYIAIIALLNGIVSNIFSTVSGGAISWDFQTLIGFVFAPF
  Newman          LGEYILDGFKVAVIVGAMLIGYIAIIALLNGIVSNIFSTVSGGAISWDFQTLIGFVFAPF
  USA300_FPR3757  LGEYILDGFKVAVIVGAMLIGYIAIIALLNGIVSNIFSTVSGGAISWDFQTLIGFVFAPF
                  ************************************************************
  
  COL             AFLVGVPWQDAVQAGSVMATKLLSNEFVAMQALGKLSDLSEHAKGVTSVFLVSFANFSSI
  N315            AFLVGVPWQDAVQAGSVMATKLLSNEFVAMQALGKLSDLSEHAKGVTSVFLVSFANFSSI
  NCTC8325        AFLVGVPWQDAVQAGSVMATKLLSNEFVAMQALGKLSDLSEHAKGVTSVFLVSFANFSSI
  Newman          AFLVGVPWQDAVQAGSVMATKLLSNEFVAMQALGKLSDLSEHAKGVTSVFLVSFANFSSI
  USA300_FPR3757  AFLVGVPWQDAVQAGSVMATKLLSNEFVAMQALGKLSDLSEHAKGVTSVFLVSFANFSSI
                  ************************************************************
  
  COL             GIISGAIKSLNDKKGDTVARFGLKLLFGATLVSFISAAIAGFFI
  N315            GIISGAIKSLNDKKGDTVARFGLKLLFGATLVSFISAAIAGFFI
  NCTC8325        GIISGAIKSLNDKKGDTVARFGLKLLFGATLVSFISAAIAGFFI
  Newman          GIISGAIKSLNDKKGDTVARFGLKLLFGATLVSFISAAIAGFFI
  USA300_FPR3757  GIISGAIKSLNDKKGDTVARFGLKLLFGATLVSFISAAIAGFFI
                  ********************************************