PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002346000
• symbol^?: nagB
• synonym:
• description^?: glucosamine-6-phosphate deaminase

  descriptions from strain specific annotations:

  • glucosamine-6-phosphate deaminase
  • glucosamine-6-phosphate isomerase
  • glucosamine-6-phosphate deaminase 1 (Glucosamine-6-phosphate isomerase 1) (GNPDA 1) (GlcN6P deaminase 1)
  • glucosamine/galactosamine-6-phosphate isomerase
  • glucosamine/galactosamine-6-phosphate isomerase, NagB
  • putative glucosamine-6-phosphate isomerase
• strand^?: +
• coordinates^?: 2885892..2886650
• synteny block^?: BlockID0016450
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0616 (nagB)
N315:
SA0527 (nagB)
NCTC8325:
SAOUHSC_00552
Newman:
NWMN_0532
USA300_FPR3757:
SAUSA300_0554
04-02981:
SA2981_0546 (nagB)
08BA02176:
C248_0644
11819-97:
MS7_0559 (nagB)
6850:
RSAU_000523 (nagB)
71193:
ST398NM01_0644
ECT-R 2:
ECTR2_523
ED133:
SAOV_0604
ED98:
SAAV_0532 (nagB)
HO 5096 0412:
SAEMRSA15_04960
JH1:
SaurJH1_0606
JH9:
SaurJH9_0592
JKD6008:
SAA6008_00577 (nagB)
JKD6159:
SAA6159_00523 (nagB)
LGA251:
SARLGA251_05050
M013:
M013TW_0557
MRSA252:
SAR0573
MSHR1132:
SAMSHR1132_05130
MSSA476:
SAS0527
Mu3:
SAHV_0567 (nagB)
Mu50:
SAV0569 (nagB)
MW2:
MW0524 (nagB)
RF122:
SAB0519
ST398:
SAPIG0644
T0131:
SAT0131_00630
TCH60:
HMPREF0772_12619 (nagB)
TW20:
SATW20_06390
USA300_TCH1516:
USA300HOU_0563 (nagB)
VC40:
SAVC_02435

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKVLNLGSKKQASFYVACELYKEMAFNQHCKLGLATGGTMTDLYEQLVKLLNKNQLNVDN
  N315            MKVLNLGSKKQASFYVACELYKEMAFNQHCKLGLATGGTMTDLYEQLVKLLNKNQLNVDN
  NCTC8325        MKVLNLGSKKQASFYVACELYKEMAFNQHCKLGLATGGTMTDLYEQLVKLLNKNQLNVDN
  Newman          MKVLNLGSKKQASFYVACELYKEMAFNQHCKLGLATGGTMTDLYEQLVKLLNKNQLNVDN
  USA300_FPR3757  MKVLNLGSKKQASFYVACELYKEMAFNQHCKLGLATGGTMTDLYEQLVKLLNKNQLNVDN
                  ************************************************************
  
  COL             VSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHIPNGDADDMNAEASKYNDV
  N315            VSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHIPNGDADDMNAEASKYNDV
  NCTC8325        VSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHIPNGDADDMNAEASKYNDV
  Newman          VSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHIPNGDADDMNAEASKYNDV
  USA300_FPR3757  VSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHIPNGDADDMNAEASKYNDV
                  ************************************************************
  
  COL             LEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTESTIKANSRYFKNEDDVPKQA
  N315            LEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTESTIKANSRYFKNEDDVPKQA
  NCTC8325        LEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTESTIKANSRYFKNEDDVPKQA
  Newman          LEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTESTIKANSRYFKNEDDVPKQA
  USA300_FPR3757  LEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTESTIKANSRYFKNEDDVPKQA
                  ************************************************************
  
  COL             ISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVDVPATLLHKHPNVEIYLDDEACP
  N315            ISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVDVPATLLHKHPNVEIYLDDEACP
  NCTC8325        ISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVDVPATLLHKHPNVEIYLDDEACP
  Newman          ISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVDVPATLLHKHPNVEIYLDDEACP
  USA300_FPR3757  ISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVDVPATLLHKHPNVEIYLDDEACP
                  ************************************************************
  
  COL             KNVAKIHVDEMD
  N315            KNVAKIHVDEMD
  NCTC8325        KNVAKIHVDEMD
  Newman          KNVAKIHVDEMD
  USA300_FPR3757  KNVAKIHVDEMD
                  ************