PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003320000
• symbol^?: pdhD
• synonym:
• description^?: dihydrolipoamide dehydrogenase

  descriptions from strain specific annotations:

  • dihydrolipoamide dehydrogenase
  • dihydrolipoyl dehydrogenase
  • pyruvate dehydrogenase E3, dihydrolipoamide dehydrogenase component PdhD
  • Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex
  • dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3
  • dihydrolipoamide dehydrogenase PdhD
• strand^?: +
• coordinates^?: 3687943..3689349
• synteny block^?: BlockID0024040
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1105 (pdhD)
N315:
SA0946 (pdhD)
NCTC8325:
SAOUHSC_01043
Newman:
NWMN_0962 (pdhD)
USA300_FPR3757:
SAUSA300_0996 (lpdA)
04-02981:
SA2981_1053 (pdhD)
08BA02176:
C248_1123 (pdhD)
11819-97:
MS7_1053
6850:
RSAU_000981 (pdhD)
71193:
ST398NM01_1093
ECT-R 2:
ECTR2_951 (lpdA)
ED133:
SAOV_1040
ED98:
SAAV_1061 (pdhD)
HO 5096 0412:
SAEMRSA15_09260 (pdhD)
JH1:
SaurJH1_1178
JH9:
SaurJH9_1156
JKD6008:
SAA6008_01051 (pdhD)
JKD6159:
SAA6159_00952 (pdhD)
LGA251:
SARLGA251_10090 (pdhD)
M013:
M013TW_1028
MRSA252:
SAR1070 (pdhD)
MSHR1132:
SAMSHR1132_09430
MSSA476:
SAS1031
Mu3:
SAHV_1088 (pdhD)
Mu50:
SAV1096 (pdhD)
MW2:
MW0979 (pdhD)
RF122:
SAB0962 (pdhD)
ST398:
SAPIG1093 (lpdA)
T0131:
SAT0131_01134
TCH60:
HMPREF0772_12136 (lpd2)
TW20:
SATW20_10910 (pdhD)
USA300_TCH1516:
USA300HOU_1039 (pdhD)
VC40:
SAVC_04640

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH
  N315            MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH
  NCTC8325        MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH
  Newman          MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH
  USA300_FPR3757  MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH
                  ************************************************************
  
  COL             ASHRFVEAQHSENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAY
  N315            ASHRFVEAQHSENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAY
  NCTC8325        ASHRFVEAQHSENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVESLLKGNKVNIVKGEAY
  Newman          ASHRFVEAQHSENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAY
  USA300_FPR3757  ASHRFVEAQHSENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAY
                  ********************************************.***************
  
  COL             FVDNNSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLV
  N315            FVDNNSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLV
  NCTC8325        FVDNNSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLV
  Newman          FVDNNSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLV
  USA300_FPR3757  FVDNNSLRVMDEKSAQTYNFKNGIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLV
                  **********************.*************************************
  
  COL             VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMA
  N315            VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMA
  NCTC8325        VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMA
  Newman          VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMA
  USA300_FPR3757  VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMA
                  ************************************************************
  
  COL             KSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDK
  N315            KSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDK
  NCTC8325        KSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDK
  Newman          KSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDK
  USA300_FPR3757  KSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDK
                  ************************************************************
  
  COL             QSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELAT
  N315            QSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELAT
  NCTC8325        QSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELAT
  Newman          QSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELAT
  USA300_FPR3757  QSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELAT
                  ************************************************************
  
  COL             VGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS
  N315            VGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS
  NCTC8325        VGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS
  Newman          VGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS
  USA300_FPR3757  VGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS
                  ************************************************************
  
  COL             DIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIHTM
  N315            DIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIHTM
  NCTC8325        DIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIHTM
  Newman          DIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIHTM
  USA300_FPR3757  DIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIHTM
                  ************************************************