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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005333000
- symbol?: sigB
- synonym:
- description?: RNA polymerase sigma factor SigB
- RNA polymerase sigma factor SigB
- sigma factor B
- RNA polymerase sigma-B factor
- RNA polymerase sigma factor B
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5511996..5512767
- synteny block?: BlockID0041300
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2005 (sigB)
08BA02176:
C248_2075 (sigB)
11819-97:
MS7_2081 (sigB)
6850:
RSAU_001904 (sigB)
71193:
ST398NM01_2105
ECT-R 2:
ECTR2_1920 (sigB)
ED133:
SAOV_2106c (sigB)
ED98:
SAAV_2117 (rpoF)
HO 5096 0412:
SAEMRSA15_19740 (sigB)
JH1:
SaurJH1_2138
JH9:
SaurJH9_2101
JKD6008:
SAA6008_02103 (sigB)
JKD6159:
SAA6159_01979 (sigB)
LGA251:
SARLGA251_18670 (sigB)
M013:
M013TW_2023
MRSA252:
SAR2152 (sigB)
MSHR1132:
SAMSHR1132_18890
MSSA476:
SAS1969
Mu3:
SAHV_2049 (sigB)
Mu50:
SAV2064 (sigB)
MW2:
MW1988 (sigB)
RF122:
SAB1949c (sigB)
ST398:
SAPIG2105 (sigB)
T0131:
SAT0131_02221 (mnhB)
TCH60:
HMPREF0772_11131 (sigB)
TW20:
SATW20_22040 (sigB)
USA300_TCH1516:
USA300HOU_2059 (fliA)
VC40:
SAVC_09200
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAKESKSANEISPEQINQWIKEHQENKNTDAQDKLVKHYQKLIESLAYKYSKGQSHHEDL
N315 MAKESKSANEVSPEQINQWIKEHQENKNTDAQDKLVKHYQKLIESLAYKYSKGQSHHEDL
NCTC8325 MAKESKSANEISPEQINQWIKEHQENKNTDAQDKLVKHYQKLIESLAYKYSKGQSHHEDL
Newman MAKESKSANEISPEQINQWIKEHQENKNTDAQDKLVKHYQKLIESLAYKYSKGQSHHEDL
USA300_FPR3757 MAKESKSANEISPEQINQWIKEHQENKNTDAQDKLVKHYQKLIESLAYKYSKGQSHHEDL
**********:*************************************************
COL VQVGMVGLIGAINRFDMSFERKFEAFLVPTVIGEIKRYLRDKTWSVHVPRRIKEIGPRIK
N315 VQVGMVGLIGAINRFDMSFERKFEAFLVPTVIGEIKRYLRDKTWSVHVPRRIKEIGPRIK
NCTC8325 VQVGMVGLIGAINRFDMSFERKFEAFLVPTVIGEIKRYLRDKTWSVHVPRRIKEIGPRIK
Newman VQVGMVGLIGAINRFDMSFERKFEAFLVPTVIGEIKRYLRDKTWSVHVPRRIKEIGPRIK
USA300_FPR3757 VQVGMVGLIGAINRFDMSFERKFEAFLVPTVIGEIKRYLRDKTWSVHVPRRIKEIGPRIK
************************************************************
COL KVSDELTAELERSPSISEIADRLEVSEEEVLEAMEMGQSYNALSVDHSIEADKDGSTVTL
N315 KVSDELTAELERSPSISEIANRLEVSEEEVLEAMEMGQSYNALSVDHSIEADKDGSTVTL
NCTC8325 KVSDELTAELERSPSISEIADRLEVSEEEVLEAMEMGQSYNALSVDHSIEADKDGSTVTL
Newman KVSDELTAELERSPSISEIADRLEVSEEEVLEAMEMGQSYNALSVDHSIEADKDGSTVTL
USA300_FPR3757 KVSDELTAELERSPSISEIADRLEVSEEEVLEAMEMGQSYNALSVDHSIEADKDGSTVTL
********************:***************************************
COL LDIMGQQDDHYDLTEKRMILEKILPILSDREREIIQCTFIEGLSQKETGERIGLSQMHVS
N315 LDIMGQQDDHYDLTEKRMILEKILPILSDREREIIQCTFIEGLSQKETGERIGLSQMHVS
NCTC8325 LDIMGQQDDHYDLTEKRMILEKILPILSDREREIIQCTFIEGLSQKETGERIGLSQMHVS
Newman LDIMGQQDDHYDLTEKRMILEKILPILSDREREIIQCTFIEGLSQKETGERIGLSQMHVS
USA300_FPR3757 LDIMGQQDDHYDLTEKRMILEKILPILSDREREIIQCTFIEGLSQKETGERIGLSQMHVS
************************************************************
COL RLQRTAIKKLQEAAHQ
N315 RLQRTAIKKLQEAAHK
NCTC8325 RLQRTAIKKLQEAAHQ
Newman RLQRTAIKKLQEAAHQ
USA300_FPR3757 RLQRTAIKKLQEAAHQ
***************: