PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006026000
• symbol^?: cntB
• synonym:
• description^?: peptide ABC transporter permease

  descriptions from strain specific annotations:

  • peptide ABC transporter permease
  • ABC transporter permease
  • oligopeptide ABC transporter, permease protein, putative
  • oligopeptide ABC transporter permease
  • oligopeptide transporter permease
  • oligopeptide transporter putative membrane permease
  • Oligopeptide transporter putative membrane permease domain protein
  • oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein
  • binding--dependent transport system inner membrane component family protein
  • binding-protein-dependent transport system inner membrane component family protein
  • binding-protein-dependent transport systems inner membrane component
  • nickel transport system permease protein
  • oligopeptide ABC transporter membrane protein
  • oligopeptide transporter membrane permease Opp-1B
  • opp-1B protein
• strand^?: -
• coordinates^?: 6082254..6083189
• synteny block^?: BlockID0047700
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2475
N315:
SA2254 (opp-1B)
NCTC8325:
SAOUHSC_02766
Newman:
NWMN_2363 (opp1B)
USA300_FPR3757:
SAUSA300_2410
04-02981:
SA2981_2403 (opp-1B)
08BA02176:
C248_2516 (opp-1B)
11819-97:
MS7_2479
6850:
RSAU_002304 (opp1B)
71193:
ST398NM01_2516
ECT-R 2:
ECTR2_2323
ED133:
SAOV_2516c
ED98:
SAAV_2532
HO 5096 0412:
SAEMRSA15_23640 (opp-1B)
JH1:
SaurJH1_2542
JH9:
SaurJH9_2493
JKD6008:
SAA6008_02507 (opp-1B)
JKD6159:
SAA6159_02363 (opp-1B)
LGA251:
SARLGA251_22460 (opp-1B)
M013:
M013TW_2426
MRSA252:
SAR2553 (opp-1B)
MSHR1132:
SAMSHR1132_22910
MSSA476:
SAS2357
Mu3:
SAHV_2450
Mu50:
SAV2466
MW2:
MW2390 (opp-1B)
RF122:
SAB2349c (opp1B)
ST398:
SAPIG2516
T0131:
SAT0131_02665
TCH60:
HMPREF0772_10723 (opp-1B)
TW20:
SATW20_25940 (opp-1B)
USA300_TCH1516:
USA300HOU_2457
VC40:
SAVC_11200

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MFKFILKRIALMFPLMIVVSFMTFLLTYITNENPAVTILHAQRTPNVTPELIAETNEKYG
  N315            MFKFILKRIALMFPLVIVVSFMTFLLTYITNENPAVTILHAQGTPNVTPELIAETNEKYG
  NCTC8325        MFKFILKRIALMFPLMIVVSFMTFLLTYITNENPAVTILHAQGTPNVTPELIAETNEKYG
  Newman          MFKFILKRIALMFPLMIVVSFMTFLLTYITNENPAVTILHAQGTPNVTPELIAETNEKYG
  USA300_FPR3757  MFKFILKRIALMFPLMIVVSFMTFLLTYITNENPAVTILHAQGTPNVTPELIAETNEKYG
                  ***************:************************** *****************
  
  COL             FNDPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNTLKLTIISSVMVMITSIIL
  N315            FNDPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNTLKLTIISSVMVMITSIIL
  NCTC8325        FNDPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNTLKLTIISSVMVMITSIIL
  Newman          FNDPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNTLKLTIISSVMVMITSIIL
  USA300_FPR3757  FNDPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNTLKLTIISSVMVMITSIIL
                  ************************************************************
  
  COL             GVVSALKRGKFTDRAIRSVAFVLTALPSYWIASILIIYVSVKLNILPTSGLTGPESYILP
  N315            GVVSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTGPESYILP
  NCTC8325        GVVSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTGPESYILP
  Newman          GVVSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTGPESYILP
  USA300_FPR3757  GVVSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTGPESYILP
                  *********************.**************************************
  
  COL             VIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGVKSITLMLHVLRNALQVAVSIFCM
  N315            VIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGVKSITLMLHVLRNAIQVAVSIFCM
  NCTC8325        VIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGVKSITLMLHVLRNALQVAVSIFCM
  Newman          VIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGVKSITLMLHVLRNALQVAVSIFCM
  USA300_FPR3757  VIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGVKSITLMLHVLRNALQVAVSIFCM
                  **************************************************:*********
  
  COL             SIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYVLIVAVLFIVFNTLADIINA
  N315            SIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYVLIVAVLFIVFNTLADIINA
  NCTC8325        SIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYVLIVAVLFIVFNTLADIINA
  Newman          SIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYVLIVAVLFIVFNTLADIINA
  USA300_FPR3757  SIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYVLIVAVLFIVFNTLADIINA
                  ************************************************************
  
  COL             LLNPRLREGAR
  N315            LLNPRLREGAR
  NCTC8325        LLNPRLREGAR
  Newman          LLNPRLREGAR
  USA300_FPR3757  LLNPRLREGAR
                  ***********