PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006068000
• symbol^?: —
• synonym:
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • putative tandem lipoprotein
  • staphylococcal tandem lipoprotein
  • lipoprotein
  • putative staphylococcal tandem lipoprotein
  • staphylococcus tandem lipoproteins family protein
• strand^?: -
• coordinates^?: 6114787..6118029
• synteny block^?: BlockID0048090
• occurrence^?: in 67% of 33 strains

⊟Orthologs

COL:
SACOL2493
N315:
SA2269
NCTC8325:
SAOUHSC_02783
Newman:
NWMN_2379
USA300_FPR3757:
SAUSA300_2424
04-02981:
SA2981_2418
08BA02176:
—
11819-97:
—
6850:
RSAU_002320
71193:
—
ECT-R 2:
ECTR2_2338
ED133:
—
ED98:
SAAV_2547
HO 5096 0412:
SAEMRSA15_23810
JH1:
SaurJH1_2559
JH9:
SaurJH9_2508
JKD6008:
SAA6008_02522
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR2570
MSHR1132:
SAMSHR1132_23080
MSSA476:
—
Mu3:
SAHV_2465
Mu50:
SAV2481
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02682
TCH60:
HMPREF0772_10705
TW20:
SATW20_26080
USA300_TCH1516:
USA300HOU_2473
VC40:
SAVC_11280

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MIHSKKLTLGICLVLLIILIVGYVIMTKTNGRNAQIKDTFNQTLKLYPTKNLDDFYDKEG
  N315            MIHSKKLTLGICLVLLIILIVGYVIMTKTNGRNAQIKDTFNQTLKLYPTKNLDDFYDKEG
  NCTC8325        MIHSKKLTLGICLVLLIILIVGYVIMTKTNGRNAQIKDTFNQTLKLYPTKNLDDFYDKEG
  Newman          MIHSKKLTLGICLVLLIILIVGYVIMTKTNGRNAQIKDTFNQTLKLYPTKNLDDFYDKEG
  USA300_FPR3757  MIHSKKLTLGICLVLLIILIVGYVIMTKTNGRNAQIKDTFNQTLKLYPTKNLDDFYDKEG
                  ************************************************************
  
  COL             FRDQEFKKGDKGTWIVNSEMVIEPKGKDMETRGMVLYINRNTRTTKGYYFISEMTDDSNG
  N315            FRDQEFKKGDKGTWIVNSEMVIEPKGKDMETRGMVLYINRNTRTTKGYYFISEMTDDSNG
  NCTC8325        FRDQEFKKGDKGTWIVNSEMVIEPKGKDMETRGMVLYINRNTRTTKGYYFISEMTDDSNG
  Newman          FRDQEFKKGDKGTWIVNSEMVIEPKGKDMETRGMVLYINRNTRTTKGYYFISEMTDDSNG
  USA300_FPR3757  FRDQEFKKGDKGTWIVNSEMVIEPKGKDMETRGMVLYINRNTRTTKGYYFISEMTDDSNG
                  ************************************************************
  
  COL             RPKDDEKRYPVKMEHNKIIPTKPLPNDKLKKEIENFKFFVQYGNFKDINDYKDGDISYNP
  N315            RPKDDEKRYPVKMEHNKIIPTKPLPNDKLRKEIENFKFFVQYGDFKDINDYKDGDISYNP
  NCTC8325        RPKDDEKRYPVKMEHNKIIPTKPLPNDKLKKEIENFKFFVQYGNFKDINDYKDGDISYNP
  Newman          RPKDDEKRYPVKMEHNKIIPTKPLPNDKLKKEIENFKFFVQYGNFKDINDYKDGDISYNP
  USA300_FPR3757  RPKDDEKRYPVKMEHNKIIPTKPLPNDKLKKEIENFKFFVQYGNFKDINDYKDGDISYNP
                  *****************************:*************:****************
  
  COL             NVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDGDLKGSSVGSRSLEFTFVEN
  N315            NVPSYSAKYQLKNDDYNVKQLRKRYNIPTNKAPKLLIKGDGDLKGSSVGSKNLEFTFVEN
  NCTC8325        NVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDGDLKGSSVGSRSLEFTFVEN
  Newman          NVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDGDLKGSSVGSRSLEFTFVEN
  USA300_FPR3757  NVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDGDLKGSSVGSRSLEFTFVEN
                  ***********:******:******:***::*****:*************:.********
  
  COL             KEENIYFTDSVQYTPSEDTRYESN
  N315            KEENIYFTDSVQYTSSEDTSYESN
  NCTC8325        KEENIYFTDSVQYTPSEDTRYESN
  Newman          KEENIYFTDSVQYTPSEDTRYESN
  USA300_FPR3757  KEENIYFTDSVQYTPSEDTRYESN
                  **************.**** ****