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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006409000
- symbol?: cap1A
- synonym:
- description?: capsular polysaccharide biosynthesis protein CapA
- capsular polysaccharide biosynthesis protein CapA
- capsular polysaccharide biosynthesis protein Cap1A
- capsular polysaccharide biosynthesis protein CapA, putative
- capsular polysaccharide synthesis protein CapA
- autoinducer sensor protein response regulator protein
- capsular polysaccharide biosynthesis protein
- capsule synthesis protein
- chain length determinant family protein
- chain length regulator (capsular polysaccharide biosynthesis)
- lipopolysaccharide biosynthesis protein
- membrane protein CapA1
- putative capsule synthesis protein
- Tyrosine- protein kinase transmembrane modulatorEpsC
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6458794..6459456
- synteny block?: BlockID0051160
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2603 (capA)
08BA02176:
C248_2734
11819-97:
MS7_2669
6850:
RSAU_002509 (capA2)
71193:
ST398NM01_2716
ECT-R 2:
ECTR2_2518
ED133:
SAOV_2716c
ED98:
SAAV_2736 (cap1A)
HO 5096 0412:
SAEMRSA15_25710
JH1:
SaurJH1_2745
JH9:
SaurJH9_2688
JKD6008:
SAA6008_02724 (cap1A)
JKD6159:
SAA6159_02560 (cap1A)
LGA251:
SARLGA251_24380
M013:
M013TW_2647
MRSA252:
SAR2745
MSHR1132:
SAMSHR1132_24920
MSSA476:
SAS2550
Mu3:
SAHV_2648
Mu50:
SAV2664
MW2:
MW2584 (capA)
RF122:
SAB2539c
ST398:
SAPIG2716
T0131:
SAT0131_02943
TCH60:
HMPREF0772_10522 (cap1A)
TW20:
SATW20_28020
USA300_TCH1516:
USA300HOU_2664 (capA)
VC40:
SAVC_12200
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSD
N315 MKEKFDLVKLLNILKKNIKLLLILPAICLVVSTALTFFVMPDKYTASTQILVNMKKSSSD
NCTC8325 MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSD
Newman MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSD
USA300_FPR3757 MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSD
********************************:***************************
COL LAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVS
N315 LAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVS
NCTC8325 LAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVS
Newman LAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVS
USA300_FPR3757 LAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVS
************************************************************
COL VTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIV
N315 VTTGNKSESDKIVNRISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIV
NCTC8325 VTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIV
Newman VTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIV
USA300_FPR3757 VTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIV
**************:*********************************************
COL GIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
N315 GIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
NCTC8325 GIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
Newman GIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
USA300_FPR3757 GIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
****************************************