From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_2170
  • pan locus tag?: SAUPAN005650000
  • symbol: SAUSA300_2170
  • pan gene symbol?:
  • synonym:
  • product:

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: pseudogene
  • locus tag: SAUSA300_2170
  • symbol: SAUSA300_2170
  • product:
  • replicon: chromosome
  • strand: -
  • coordinates: 2350609..2352231
  • length: 1623
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGAATATGAAAAATTAAATGCAAAAATAGCAAATACCTATGCAAATTTTTCAACAGCAA
    ATTTAAAAAAATCATTATATGATTCGTATATACAGGCTTTTCGATGGGCAACTGATAGAG
    TTGGAAAAAAGGTATTATAGGATTTGTAACAAATGGATCATTTATTGATAGTCAAAGCAC
    TGATGGATTTAGAAAAGTTTTATACGATGAATTTAACTATCTGTACATAATTAATTTGAG
    AGGCGACCAACGAACACAGGGTGAAAAATCAAGAAAAGAAGGTGGAAAAATATTTGGATC
    AGGAAGTAGAGCACCGATAGCTATATCTATTTTAGTTAAAGATGGAAGTTACAATCACGA
    TATCTATTATAATGACATTGGTGAATATTTAACTAGAGAGCAAAAATTAGATACTTTAAT
    GAAACATCAATCAATTGTGAATTTGAAAAGTTTGAATGTTTTACCCGATAAAAACAATGA
    TTGGATTAATCAACGAGACATAAACTATGAGAATTATTTACCAATGTATGATTCCAAGGA
    TATTGAAAATTCTATATATTTAGATCAATTTAATGGAGTAAATTCAGCAAGAGATAATTG
    GGTAACAAATTTTTCGAATGAAAAAGCATTAGTAAATGCAAAATTACTTGTAGATAACTA
    TAATTCTGAAATAGATAGATTAATTGATATCTTAGATTCAAGAGAACGTATAAATTTAGT
    GAACAAAGATGAAACATTTATTAGTTGGACACGAGGACTTACCCAAAAATTTTCTAAAGG
    AAAAAATATTTCAATTAATCCAGAGAGAATTGTTAAATTTATGCATAGACCATTTACAAA
    AAAATGGATAGTGTACGACAAAAATATTATGGAAATGCCAAGTAGATATTATAATATAAT
    GGAGAATACTGGACAGGTGATTTATATACAAGGACAGGGAATGAATAAAGAATTCTCGGC
    TATGATCACGGACATATTACCTAATTTCCAATTTATTGGTAATGGCAAAGGCTTTGCTAC
    ATACAAAGGTAAAGATAGTTTGAGGCTTGTAGATAATATTTCTAATTCTTTTAAAAAGAA
    AATAAATCTTAATTCAGAAGAGATAGTATATTATATATATGCAATTTTGCATCATAAATA
    TTATGTGAACAAATATTCAAGTGATTTGAGTAAAGGTTTTCCGCGAATACCGATATTAAA
    GGATGTATATGGATTTGTTGAAATTGGTAGGGAGTTAGTGGAATTACATTTAAATTATGA
    AAAACAACTCAATTGGGATGGTGTAGAAATAATTTATAATAATATGAATCCGAATTATAA
    AGTTGAAAAATGAAGCACCCTAAAAAGGGCGTGTTGGATACAGTAATATACAATACCGAT
    ATTACAGTTACTAACATTCCAAATAAAGTATATAATTATATTGTGAATGGCAAGCCTGCT
    ATTGAATGGATTATAGATCAGTACAACGTAAGCATCGACAAGAAATCTGGAATATTAGAT
    GATCCTAATGAATTTAGTGAAGATCCGAATTACATTTTAAATCTGCTTTTATCAGTTATT
    ACTGTAAGTATGAAAACTCTTGGATTAATAGATAAATTACCAGATTTTGAAGTATTAGAT
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1623

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_2170
  • symbol: SAUSA300_2170
  • description:
  • length:
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for NCTC8325
  • PFAM:

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb:
  • LocateP:
  • SignalP:
  • predicted transmembrane helices (TMHMM):

Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

Protein sequence[edit | edit source]

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]