NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_1626 [new locus tag: SAUSA300_RS08870 ]
- pan locus tag?: SAUPAN004298000
- symbol: rpmI
- pan gene symbol?: rpmI
- synonym:
- product: 50S ribosomal protein L35
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_1626 [new locus tag: SAUSA300_RS08870 ]
- symbol: rpmI
- product: 50S ribosomal protein L35
- replicon: chromosome
- strand: -
- coordinates: 1779649..1779849
- length: 201
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3912859 NCBI
- RefSeq: YP_494321 NCBI
- BioCyc: see SAUSA300_RS08870
- MicrobesOnline: 1293141 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGCCAAAAATGAAAACTCACCGCGGAGCAGCTAAACGTGTTAAAAGAACTGCTTCAGGT
CAATTAAAACGTTCAAGAGCTTTCACATCTCACTTATTCGCAAACAAGAGCACTAAACAA
AAACGTCAATTACGTAAAGCTAGATTAGTGTCTAAGAGCGATATGAAACGTGTAAAACAA
TTATTAGCATACAAAAAATAA60
120
180
201
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_1626 [new locus tag: SAUSA300_RS08870 ]
- symbol: RpmI
- description: 50S ribosomal protein L35
- length: 66
- theoretical pI: 12.8298
- theoretical MW: 7697.22
- GRAVY: -1.12879
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein bL35 (TIGR00001; HMM-score: 87.4)
- ⊞TheSEED :
- LSU ribosomal protein L35p
and 1 more - PFAM: no clan defined Ribosomal_L35p; Ribosomal protein L35 (PF01632; HMM-score: 87.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MPKMKTHRGAAKRVKRTASGQLKRSRAFTSHLFANKSTKQKRQLRKARLVSKSDMKRVKQLLAYKK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: rplT < rpmI < infC
⊟Regulation[edit | edit source]
- ⊞regulator: L20 leader (transcription termination) regulon
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available