NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_2197 [new locus tag: NWMN_RS12680 ]
- pan locus tag?: SAUPAN005763000
- symbol: sarY
- pan gene symbol?: sarY
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_2197 [new locus tag: NWMN_RS12680 ]
- symbol: sarY
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2416379..2417122
- length: 744
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331323 NCBI
- RefSeq: YP_001333231 NCBI
- BioCyc:
- MicrobesOnline: 3707799 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGTCTAAATTTAAAGTTAAGCGTTTAACTGCACACATACTAATGTTGAAAGTCATTAAT
GATATGTTGAAATATTCATTTCATCTCACTTTGACTCAAGTGAAACTATTAAATCTATTA
GTTAAATATGATAATTCTGATTCCAATAGCGCTTCAATAGATAGTTTATTAAAAATGAAA
GAAATCCAATCTAAGATGGCCCTTCTTCAAATGTTAAGTTATTTAAACAATCATCAATGG
CTATTGAAAGGAAGAGATCAAAGGGATCAACGTAAATTGACTATTTCGATTAATAAAATG
CATATAGATAAAATAGAATATATGAATAATGAGCTTAGTGACTATATTGAACGTTATTTT
GGTCAATATACATTTGATTTTAGTTGTGACTATGTATCGTATTTATTGTCGTCACAAGAA
TTATTGCGGAATCTAAAGTGTTATTTAAATATGTGTCAATTATCATTAGAAGAGTTATAC
GTTTTAGGAATATTAAATCTGCATAAAGGTCAATTGACGGTTAAAGAATTACAGGGTGAA
TTCCATCACCCGATATTTGCGGTTAGCCCGATTTTAAAGTGTTTAATTTTGAAGGGATTA
GTTAAAAAAGAGAGATGTGAATTAGATGAAAGGCGTGTTATTGTAACAATCAAGCGAGAA
AAGTTTTCTAAAGTCACTATGCTTATTCAAGCATGTTATAATTATCTTGAAAAGGGAATA
CAAGTTAATCTTAATAATAAATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_2197 [new locus tag: NWMN_RS12680 ]
- symbol: SarY
- description: hypothetical protein
- length: 247
- theoretical pI: 9.58575
- theoretical MW: 29143.2
- GRAVY: -0.184211
⊟Function[edit | edit source]
- ⊞TIGRFAM: Regulatory functions DNA interactions staphylococcal accessory regulator family (TIGR01889; HMM-score: 198.4)and 1 more
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- ⊞PFAM: HTH (CL0123) MarR_2; MarR family (PF12802; HMM-score: 24.9)MarR; MarR family (PF01047; HMM-score: 20.3)and 2 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSKFKVKRLTAHILMLKVINDMLKYSFHLTLTQVKLLNLLVKYDNSDSNSASIDSLLKMKEIQSKMALLQMLSYLNNHQWLLKGRDQRDQRKLTISINKMHIDKIEYMNNELSDYIERYFGQYTFDFSCDYVSYLLSSQELLRNLKCYLNMCQLSLEELYVLGILNLHKGQLTVKELQGEFHHPIFAVSPILKCLILKGLVKKERCELDERRVIVTIKREKFSKVTMLIQACYNYLEKGIQVNLNNK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊞Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊞Other Information[edit | edit source]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Bettina Schulthess, Dominik A Bloes, Patrice François, Myriam Girard, Jacques Schrenzel, Markus Bischoff, Brigitte Berger-Bächi
The σB-dependent yabJ-spoVG operon is involved in the regulation of extracellular nuclease, lipase, and protease expression in Staphylococcus aureus.
J Bacteriol: 2011, 193(18);4954-62
[PubMed:21725011] [WorldCat.org] [DOI] (I p)