PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0071 [new locus tag: SAUSA300_RS00360 ]
- pan locus tag?: SAUPAN000819000
- symbol: SAUSA300_0071
- pan gene symbol?: —
- synonym:
- product: ISSep1-like transposase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0071 [new locus tag: SAUSA300_RS00360 ]
- symbol: SAUSA300_0071
- product: ISSep1-like transposase
- replicon: chromosome
- strand: +
- coordinates: 78432..79445
- length: 1014
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3914036 NCBI
- RefSeq: YP_492789 NCBI
- BioCyc: see SAUSA300_RS00360
- MicrobesOnline: 1291586 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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961ATGGAACGATTTTGTTGTGTAAATCAAATTAACTATATTCAAATGAATCCGTTAGAAGCC
AAATTTAAAACGAGCGCTCTAAGATCATGGAAAACTGATCAGGCAGATGCTCATAAGCTT
GCTTGTTTAGGACCGACGCTCAAACAAACAGGCAGCTTACCTATACATGAGTTAATATTC
TTTGAATTAAGAGAACGTGCCCGTTTTCATCTAGAAATCGAGAATGAACAAAATCGACTT
AAATTTCAGATTCTTGAATTACTCCATCAAACATTCCCTGGTTTAGAAAGATTATTTAGT
AGTCGATATTCAATCATTGCACTCAACATCGCAGAAATTTTTACTCATCCAGACGTGGTT
CTTGATATCGACAAGGATGTACTTATTACACATATATTCAATTCTACAGATAAGGGAATG
TCAATGGATAAAGCTACAAAATATGCACTTCAATTAAGAGTGATTGCTCAAGAAAGCTAT
CCTAATGTCGATAGACATTCCTTTCTAGTCGAAAAATTACGCTTACTTATTCAACAATTA
AAACAATCTATTCATCATCTCAAACAATTAGATGATGCCATGATTCAATTAGCACAACAA
CTCGATTATTTTGAAAATATTCATTCGATACCTGGTATTGGTAAGCTAAGCACAGCTATG
ATTATTGGGGAGATTGGTGATATTAAGCGATTTAAATCAAATAAACAACTCAACGCTTTT
GTAGGCATTGATATCAAACGATATCAATCAGGTCATACACACTGTAGAGATACCATCAAC
AAGCGTGGTAATAAAAAAGCGAGAAAACTTTTATTTTGGGTGATTATGAATATAATAAGA
GGGCAGCATCATTATGACAATCATGTCGTCGATTATTACTACAAACTAAGAAAGCAGCCT
AATGAGAAACCTCATAAGACTGCCATCATTGCTTGTATAAATCGATTATTAAAAACGATT
CATTATCTGGTAATGAATCATAAATTGTACGATTATCAAATGTCACCACATTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0071 [new locus tag: SAUSA300_RS00360 ]
- symbol: SAUSA300_0071
- description: ISSep1-like transposase
- length: 337
- theoretical pI: 9.82964
- theoretical MW: 39540.7
- GRAVY: -0.359941
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Mobile element protein
- ⊞PFAM: HHH (CL0198) Transposase_20; Transposase IS116/IS110/IS902 family (PF02371; HMM-score: 76.3)and 4 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLGPTLKQTGSLPIHELIFFELRERARFHLEIENEQNRLKFQILELLHQTFPGLERLFSSRYSIIALNIAEIFTHPDVVLDIDKDVLITHIFNSTDKGMSMDKATKYALQLRVIAQESYPNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLSTAMIIGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIMNIIRGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQMSPH
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available