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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0660 [new locus tag: NWMN_RS03740 ]
  • pan locus tag?: SAUPAN002575000
  • symbol: NWMN_0660
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_0660 [new locus tag: NWMN_RS03740 ]
  • symbol: NWMN_0660
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 741608..742981
  • length: 1374
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGGCAATTGCTGTGTTATTAAATCGAATGTTTCGAATGGAACACAATCCATTATTTGAA
    TATATTTATCAACAAAAAGAAGACATTGATGCATGTTATTTTATCATTCCGGAAGAGGAC
    ATGTCTTCAGCTTCTGATTTGAAAGCACAGTTTTATCGCGGTACTTTGCAGCGCTTTTAC
    CAATCGTTGCACGCAGAAAAGCTTACACCTTATGTTATGTCTTATGACGATATCATTTCA
    TTTTGTAAAGAAAACAATATCTCTGAAGTAGTGACTGCGGGTGATATTATGAGTTATCAT
    CTTGAAGAATATGATATTTTACATCAACGTTCTTTATTCAATGAAGCACGCATTGCCGTT
    ACTTTGATACGTGGGAATCATTACTTTAAAGCGAGTAAAACAATGAATCAACAAGGGGAG
    CCATACAATGTTTTTACTAGTTTCTATAAAAAATGGCGACCTTACTTGAGGCATAGAGAC
    GTATATCACTATGATTTAAAATCATTCGAAGACTTTGTCATTGCATCACCTGATGATTTA
    GTGTTTGATGACATAGCATTTGGATCCTCACAAATAATTGAACAGAATAAATGGCAACAT
    TTTTTAGATCAAGATATACAGAATTACGAAAGCGGAAGAGACTATTTACCTGAAGTATTA
    ACAAGTCAGCTAAGTGTTGCTTTAGCATATGGATTATTAGATATTATTGAAATTTTTAAT
    GATTTATTGGCGCGTTATGATGAAGATGAGGCAAACTATGAAGCATTTATACGTGAACTC
    ATTTTTAGAGAATTTTATTATGTGTTAATGACACAGTATCCTGAAACCTCATACCAAGCT
    TTCAAACCTAAATATCGACAGATAAAATGGTCGCAAAATGAAGCGGATTTTAATGCATGG
    TGCGAAGGGCAAACAGGATTTCCAATCATTGATGCAGCAATAATGGAATTGACACAAACT
    GGTTTTATGCATAATCGAATGAGAATGGTTGTGTCGCAATTTTTAACCAAAGATTTATTT
    ATAGATTGGACATGGGGAGAAAAATTCTTTAGAAAGCACCTTATTGACTATGATGCAGCA
    TCAAATATTCATGGATGGCAATGGTCTGCTTCTACAGGTACGGATGCAGTGCCGTATTTT
    AGAATGTTTAATCCAATAAGACAGAGTGAACGCTTTGATGCTAAAGCTTTGTATATCAAA
    ACATATCTTCCGATTTTTAATCAAATTGATGCAAAATATTTGCATGATACACAACGCAAT
    GAGTCCAACCTTTTTGAACAGGGGATTGAATTAGGTAGTCATTATCCAAGACAAATGGTA
    GATCATCAAGAAAAACGTACACAAGTTTTAGCTACATTTAAAGCGCTAGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1374

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_0660 [new locus tag: NWMN_RS03740 ]
  • symbol: NWMN_0660
  • description: hypothetical protein
  • length: 457
  • theoretical pI: 4.9108
  • theoretical MW: 54369.9
  • GRAVY: -0.449015

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingDNA metabolismDNA replication, recombination, and repairdeoxyribodipyrimidine photo-lyase, 8-HDF type (TIGR03556; EC 4.1.99.3; HMM-score: 249.3)
    cryptochrome, plant family (TIGR02766; HMM-score: 149.8)
    Cellular processesCellular processesAdaptations to atypical conditionscryptochrome, DASH family (TIGR02765; HMM-score: 149.2)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairdeoxyribodipyrimidine photolyase (TIGR00591; EC 4.1.99.3; HMM-score: 17.7)
    Unknown functionEnzymes of unknown specificityputative phosphoesterase (TIGR00024; EC 3.1.-.-; HMM-score: 13.9)
  • TheSEED:  
    DNA MetabolismDNA repairDNA repair, bacterial photolyase Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 
    EC699-706 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 
  • PFAM:
    no clan definedFAD_binding_7; FAD binding domain of DNA photolyase (PF03441; HMM-score: 250.2)
    HUP (CL0039) DNA_photolyase; DNA photolyase (PF00875; HMM-score: 44.2)
    Calcineurin (CL0163) Metallophos; Calcineurin-like phosphoesterase (PF00149; HMM-score: 14.5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.122
    • Ymax_pos: 11
    • Cmax: 0.13
    • Cmax_pos: 32
    • Smax: 0.242
    • Smax_pos: 2
    • Smean: 0.141
    • D: 0.129
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFYQSLHAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLVFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFNDLLARYDEDEANYEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]