PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002575000
• symbol^?: —
• synonym:
• description^?: deoxyribodipyrimidine photolyase

  descriptions from strain specific annotations:

  • deoxyribodipyrimidine photolyase
  • deoxyribodipyrimidine photolyase, putative
  • putative deoxyribodipyrimidine photolyase
  • DNA photolyase family protein
  • FAD binding domain of DNA photolyase family protein
  • FAD binding domain of DNA photolyase protein
  • putative DNA photolyase
• strand^?: +
• coordinates^?: 3087228..3088831
• synteny block^?: BlockID0018110
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0751
N315:
SA0646
NCTC8325:
SAOUHSC_00699
Newman:
NWMN_0660
USA300_FPR3757:
SAUSA300_0677
04-02981:
SA2981_0668
08BA02176:
C248_0776
11819-97:
MS7_0743
6850:
RSAU_000667
71193:
ST398NM01_0769
ECT-R 2:
ECTR2_643
ED133:
SAOV_0726
ED98:
SAAV_0654
HO 5096 0412:
SAEMRSA15_06170
JH1:
SaurJH1_0731
JH9:
SaurJH9_0715
JKD6008:
SAA6008_00708 (phrB)
JKD6159:
SAA6159_00646 (phrB)
LGA251:
SARLGA251_06240
M013:
M013TW_0678
MRSA252:
SAR0744
MSHR1132:
SAMSHR1132_06370
MSSA476:
SAS0656
Mu3:
SAHV_0688
Mu50:
SAV0691
MW2:
MW0653
RF122:
SAB0640
ST398:
SAPIG0769
T0131:
SAT0131_00762
TCH60:
HMPREF0772_12496 (phrB)
TW20:
SATW20_07660
USA300_TCH1516:
USA300HOU_0714 (phrB)
VC40:
SAVC_03090

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFY
  N315            MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFY
  NCTC8325        MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFY
  Newman          MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFY
  USA300_FPR3757  MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFY
                  ************************************************************
  
  COL             QSLHAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEARIAV
  N315            QSLHAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQRSLFNEARIAV
  NCTC8325        QSLHAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEARIAV
  Newman          QSLHAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEARIAV
  USA300_FPR3757  QSLHAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEARIAV
                  ******************************* ****************************
  
  COL             TLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDL
  N315            TLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFEDFVIASPDDL
  NCTC8325        TLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFENFVIASPDDL
  Newman          TLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDL
  USA300_FPR3757  TLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDL
                  **********************:******:********************:*********
  
  COL             VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN
  N315            VFDDIAFGSSQVIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN
  NCTC8325        VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN
  Newman          VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN
  USA300_FPR3757  VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN
                  ***********:************************************************
  
  COL             DLLARYDEDEANYEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEADFNAW
  N315            DLLARYDEDEANHEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEANFNAW
  NCTC8325        DLLARYDEDEANYEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEADFNAW
  Newman          DLLARYDEDEANYEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEADFNAW
  USA300_FPR3757  DLLARYDEDEANYEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEADFNAW
                  ************:******************************************:****
  
  COL             CEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAA
  N315            CEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAA
  NCTC8325        CEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAA
  Newman          CEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAA
  USA300_FPR3757  CEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAA
                  ************************************************************
  
  COL             SNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRN
  N315            SNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRN
  NCTC8325        SNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRN
  Newman          SNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRN
  USA300_FPR3757  SNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRN
                  ************************************************************
  
  COL             ESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD
  N315            ESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD
  NCTC8325        ESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD
  Newman          ESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD
  USA300_FPR3757  ESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD
                  *************************************