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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0706 [new locus tag: NWMN_RS04000 ]
  • pan locus tag?: SAUPAN002641000
  • symbol: NWMN_0706
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_0706 [new locus tag: NWMN_RS04000 ]
  • symbol: NWMN_0706
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 792662..792976
  • length: 315
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGCCTAAAGTTTATGGTTCATTAATCGATACTGAAACACGCTGTCGCCATTATTTTACC
    GAAGAAGATATTATTGCTATTAAATTTAAATGTTGTAATAAATACTATCCATGCTATAAG
    TGCCATAATGAGTTTGAAAAGCACGCCATTAAGCGTTGGTCTGAGCCTTCATTTAACGAA
    AAAGCAATCTTATGCGGTGTATGCAAACACGAATTAACAATCAATGAATATATGATGGTA
    GAGCGTTGTCCAAATTGCCAATCTCGGTTTAACAATCGCTGTAAATATCACTATCATATT
    TATTTTGAAATTTAA
    60
    120
    180
    240
    300
    315

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_0706 [new locus tag: NWMN_RS04000 ]
  • symbol: NWMN_0706
  • description: hypothetical protein
  • length: 104
  • theoretical pI: 8.09137
  • theoretical MW: 12723.7
  • GRAVY: -0.645192

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MJ0042 family finger-like domain (TIGR02098; HMM-score: 11)
    Genetic information processingProtein fateProtein modification and repairhydrogenase nickel insertion protein HypA (TIGR00100; HMM-score: 7.4)
  • TheSEED:  
    FIG01108317: hypothetical protein 
  • PFAM:
    no clan definedzf-CHY; CHY zinc finger (PF05495; HMM-score: 48.8)
    Zn_Beta_Ribbon (CL0167) DZR; Double zinc ribbon (PF12773; HMM-score: 16.1)
    no clan definedHypA; Hydrogenase/urease nickel incorporation, metallochaperone, hypA (PF01155; HMM-score: 13.3)
    Evr1_Alr; Erv1 / Alr family (PF04777; HMM-score: 7.1)
    Zn_Beta_Ribbon (CL0167) DUF1451; Zinc-ribbon containing domain (PF07295; HMM-score: 6.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.109
    • Ymax_pos: 53
    • Cmax: 0.107
    • Cmax_pos: 41
    • Smax: 0.153
    • Smax_pos: 48
    • Smean: 0.101
    • D: 0.106
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MPKVYGSLIDTETRCRHYFTEEDIIAIKFKCCNKYYPCYKCHNEFEKHAIKRWSEPSFNEKAILCGVCKHELTINEYMMVERCPNCQSRFNNRCKYHYHIYFEI

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]